YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR33_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.82
Transmembrane Helix	48	67	0.63
Non-Cytoplasmic	68	73	0.62
Transmembrane Helix	74	94	0.90
Cytoplasmic	95	102	0.71
Transmembrane Helix	103	125	0.88
Non-Cytoplasmic	126	149	0.77
Transmembrane Helix	150	171	0.73
Cytoplasmic	172	191	0.95
Transmembrane Helix	192	215	0.90
Non-Cytoplasmic	216	221	0.92
Transmembrane Helix	222	243	0.92
Cytoplasmic	244	337	0.98
Transmembrane Helix	338	358	0.74
Non-Cytoplasmic	359	372	0.78
Transmembrane Helix	373	395	0.86
Cytoplasmic	396	414	0.82
Transmembrane Helix	415	436	0.92
Non-Cytoplasmic	437	455	0.80
Transmembrane Helix	456	475	0.84
Cytoplasmic	476	490	0.70
Transmembrane Helix	491	512	0.93
Non-Cytoplasmic	513	531	0.80
Transmembrane Helix	532	552	0.95
Cytoplasmic	553	590	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHVSSSHGA KDGSEEAYDY RGNPPDKSKT GGWLGAGLIL GSELSERICV MGISMNLVTY  60
   61 LVGDLHISSA KSATIVTNFM GTLNLLGLLG GFLADAKLGR YKMVAISASV TALGVLLLTV 120
  121 ATTISSMRPP ICDDFRRLHH QCIEANGHQL ALLYVALYTI ALGGGGIKSN VSGFGSDQFD 180
  181 TSDPKEEKQM IFFFNRFYFS ISVGSLFAVI ALVYVQDNVG RGWGYGISAA TMVVAAIVLL 240
  241 CGTKRYRFKK PKGSPFTTIW RVGFLAWKKR KESYPAHPSL LNGYDNTTVP HTEMLKCLDK 300
  301 AAISKNESSP SSKDFEEKDP WIVSTVTQVE EVKLVMKLVP IWATNILFWT IYSQMTTFTV 360
  361 EQATFMDRKL GSFTVPAGSY SAFLILTILL FTSLNERVFV PLTRRLTKKP QGITSLQRIG 420
  421 VGLVFSMAAM AVAAVIENAR REAAVNNDKK ISAFWLVPQY FLVGAGEAFA YVGQLEFFIR 480
  481 EAPERMKSMS TGLFLSTISM GFFVSSLLVS LVDRVTDKSW LRSNLNKARL NYFYWLLVVL 540
  541 GALNFLIFIV FAMKHQYKAD VITVVVTDDD SVEKEVTKKE SSEFELKDIP