YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20334730, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLLKLDIA TTFLAFIVPR ANTSLNHRFA SARLSTATVS LRTKSSSFYS AALYSDSRRR  60
   61 FHSAVASDSS LAVVDDEDIF DVASEILPDN RIPATIITGF LGSGKTTLLN HILTGDHGKR 120
  121 IAVIENEFGE VDIDGSLVAA QTAGAEDIMM LNNGCLCCTV RGDLVRMISE MVQTKKGRFD 180
  181 HIVIETTGLA NPAPIIQTFY AEDEIFNDVK LDGVVTLVDA KHARLHLDEV KPEGYVNEAV 240
  241 EQIAYADRII VNKTDLVGEP ELASVMQRIK TINSMAHMKR TKYGKVDLDY VLGIGGFDLE 300
  301 RIESSVNEEE KEDREGHDDH HHGHDCHDHH NEHEHEHEHE HHHSHDHTHD PGVGSVSIVC 360
  361 EGDLDLEKAN MWLGALLYQR SEDIYRMKGI LSVQDMDERF VFQGVHEIFE GSPDRLWRKD 420
  421 ETRTNKIVFI GKNLNREELE MGFRACLI

Type	Start	End	Confidence
Signal Peptide	1	23	0.83
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	448	0.99