YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSSP2_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.31
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.30
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	45	0.63
Transmembrane Helix	46	67	0.90
Cytoplasmic	68	74	0.58
Transmembrane Helix	75	94	0.89
Non-Cytoplasmic	95	99	0.46
Transmembrane Helix	100	122	0.78
Cytoplasmic	123	134	0.54
Transmembrane Helix	135	157	0.85
Non-Cytoplasmic	158	164	0.50
Transmembrane Helix	165	185	0.93
Cytoplasmic	186	506	0.62
Transmembrane Helix	507	523	0.51
Non-Cytoplasmic	524	551	0.78
Transmembrane Helix	552	573	0.88
Cytoplasmic	574	582	0.86
Transmembrane Helix	583	605	0.90
Non-Cytoplasmic	606	612	0.70
Transmembrane Helix	613	634	0.88
Cytoplasmic	635	648	0.78
Transmembrane Helix	649	670	0.91
Non-Cytoplasmic	671	676	0.82
Transmembrane Helix	677	698	0.94
Cytoplasmic	699	729	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAVLVAIA AAVGNLLQGW DNATIAGAVL YIKKEFNLES NPSVEGLIVA MSLIGATLIT  60
   61 TCSGGVADWL GRRPMLILSS ILYFVGSLVM LWSPNVYVLL LGRLLDGFGV GLVVTLVPIY 120
  121 ISETAPPEIR GLLNTLPQFT GSGGMFLSYC MVFGMSLMPS PSWRLMLGVL FIPSLVFFFL 180
  181 TVFFLPESPR WLVSKGRMLE AKRVLQRLRG REDVSGEMAL LVEGLGIGGE TTIEEYIIGP 240
  241 ADEVTDDHDI AVDKDQIKLY GAEEGLSWVA RPVKGGSTMS VLSRHGSTMS RRQGSLIDPL 300
  301 VTLFGSVHEK MPDTGSMRSA LFPHFGSMFS VGGNQPRHED WDEENLVGEG EDYPSDHGDD 360
  361 SEDDLHSPLI SRQTTSMEKD MPHTAHGTLS TFRHGSQVQG AQGEGAGSMG IGGGWQVAWK 420
  421 WTEREDESGQ KEEGFPGSRR GSIVSLPGGD GTGEADFVQA SALVSQPALY SKDLLKEHTI 480
  481 GPAMVHPSET TKGSIWHDLH DPGVKRALVV GVGLQILQQF SGINGVLYYT PQILEQAGVG 540
  541 ILLSNMGISS SSASLLISAL TTFVMLPAIA VAMRLMDLSG RRTLLLTTIP ILIASLLVLV 600
  601 ISNLVHMNSI VHAVLSTVSV VLYFCFFVMG FGPAPNILCS EIFPTRVRGI CIAICALTFW 660
  661 ICDIIVTYSL PVLLKSIGLA GVFGMYAIVC CISWVFVFIK VPETKGMPLE VITEFFSVGA 720
  721 RQAEAAKNE