YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110740771, gi...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGSSETKIL QELILYAASA AFSCLVLFAG LRHLDPNREA SKKALEHKKE ISKRLGRPLV  60
   61 QTNPYEDVIA CDVINPDHID VEFGSIGGLE TIKQALYELV ILPLKRPELF AYGKLLGPQK 120
  121 GVLLYGPPGT GKTMLAKAIA KESGAVFINV RVSNLMSKWF GDAQKLVSAV FSLAYKLQPA 180
  181 IIFIDEVESF LGQRRSTDHE AMANMKTEFM ALWDGFSTDP HARVMVLAAT NRPSELDEAI 240
  241 LRRLPQAFEI GIPDRRERAE ILKVTLKGER VEPDIDFDHI ARLCEGYTGS DIFELCKKAA 300
  301 YFPIREILDA ERKGKPCLDP RPLSQLDLEK VLATSKKTQV AAGEYSLSSQ SSAWRGSREP 360
  361 DEVQAAISGI SKLLVSQIIN LQSESQDSWQ RDPEEDSR

Type	Start	End	Confidence
Cytoplasmic	1	12	0.62
Transmembrane Helix	13	31	0.78
Non-Cytoplasmic	32	398	0.89