YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79324249, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.98
Transmembrane Helix	34	56	0.93
Non-Cytoplasmic	57	76	0.92
Transmembrane Helix	77	98	0.87
Cytoplasmic	99	117	0.87
Transmembrane Helix	118	138	0.90
Non-Cytoplasmic	139	145	0.74
Transmembrane Helix	146	168	0.90
Cytoplasmic	169	175	0.87
Transmembrane Helix	176	196	0.91
Non-Cytoplasmic	197	208	0.72
Transmembrane Helix	209	225	0.57
Cytoplasmic	226	244	0.53
Transmembrane Helix	245	264	0.92
Non-Cytoplasmic	265	286	0.60
Transmembrane Helix	287	312	0.73
Cytoplasmic	313	331	0.61
Transmembrane Helix	332	352	0.58
Non-Cytoplasmic	353	359	0.76
Transmembrane Helix	360	381	0.89
Cytoplasmic	382	415	0.94
Transmembrane Helix	416	435	0.89
Non-Cytoplasmic	436	439	0.67
Transmembrane Helix	440	459	0.83
Cytoplasmic	460	475	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGFRVLHL VRPFLAFLPE VQSADRKVPF REKVIYTVIS LFIFLVCSQL PLYGIHSTTG  60
   61 ADPFYWMRVI LASNRGTVME LGITPIVTSG LVMQLLAGSK IIEVDNNVRE DRALLNGAQK 120
  121 LLGILIAIGE AVAYVLSGMY GPVGQLGVGN AILIILQLFF AGIIVICLDE LLQKGYGLGS 180
  181 GISLFIATNI CESIIWKAFS PTTINTGRGA EFEGAVIALF HMLITKSNKV AALRQAFYRQ 240
  241 NLPNVTNLLA TVLIFLIVIY FQGFRVVLPV RSKNARGQQG SYPIKLFYTS NMPIILQSAL 300
  301 VSNLYFISQL LYRKFSGNFF VNLLGQWKES EYSGQSIPVS GLAYLITAPA SFSDMAAHPF 360
  361 HALFYIVFML TACALFSKTW IEVSGSSARD VAKQLKEQQM VMPGHRESNL QKELNRYIPT 420
  421 AAAFGGVCIG ALTVLADFMG AIGSGTGILL AVTIIYQYFE TFEKEKASEL GFFGF