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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CCS1_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVTLNPKIL HFSKIHPFSR PSSYLCRTRN VSLITNCKLQ KPQDGNQRSS SNRNLTKTIS  60
   61 LSDSAPPVTE ETGDGIVKGG GNGGGGGGDG RGGLGFLKIL PRKVLSVLSN LPLAITEMFT 120
  121 IAALMALGTV IEQGETPDFY FQKYPEDNPV LGFFTWRWIS TLGLDHMYSA PIFLGMLVLL 180
  181 AASLMACTYT TQIPLVKVAR RWSFMKSDEA IKKQEFADTL PRASIQDLGM ILMGDGFEVF 240
  241 MKGPSLYAFK GLAGRFAPIG VHIAMLLIMV GGTLSATGSF RGSVTVPQGL NFVMGDVLAP 300
  301 IGFFSIPTDA FNTEVHVNRF TMDYYDSGEV SQFHSDLSLR DLNGKEVLRK TISVNDPLRY 360
  361 GGVTVYQTDW SFSALQVTKD GEGPFNLAMA PIKINGDKKL YGTFLPVGDT NAPNVKGISM 420
  421 LARDLQSIVV YDLDGKFAGI RRPSSKLPIE INGMKIVIED AIGSTGLELK TDPGVPVVYA 480
  481 GFGALMLTTC ISYLSHSQIW ALQNGTALVV GGKTNRAKNQ FPDDMNRLLD QVPELIKKNT 540
  541 SVVSEQS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle