YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C78A7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELMNLASKE TSYWMIALPA GFGSQNLHDV STLGYLFLAV VFLSIVTWAL AGGGGVAWKN  60
   61 GRNRLGRVAI PGPRGIPVFG SLFTLSRGLA HRTLAAMAWS RANTEIMAFS LGSTPVIVAS 120
  121 EPNIAREILM SPHFADRPVK QSAKSLMFSR AIGFAPNGTY WRMLRRIAST HLFAPRRILA 180
  181 HEAGRQLDCA EMVKAVSVEQ NGAGSVVLRK HLQLAALNNI MGSVFGRRYD PLAQKEDLDE 240
  241 LTSMVREGFE LLGAFNWSDY LPWLGYFYDS IRLNQRCSDL VPRIRTLVKK IIDEHRVSNS 300
  301 EKKRDIGDFV DVLLSLDGDE KLQEDDMIAV LWEMIFRGTD TTALLTEWTM AELVLNPNVQ 360
  361 TKLRDEILTA VGDGADGDVA DADLAKLPYL NAVVKETLRL HPPGPLLSWA RLSTSDVQLS 420
  421 NGMVIPKGTT AMVNMWAITH DQTVWSDPLK FDPERFTGNA DMDIRGGDLR LAPFGAGRRV 480
  481 CPGKNMGLAT VTRWVAELVR RFEWGQDQTE PVDLGEVLKL SCEMEHPLRA VVTEIF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.72
Transmembrane Helix	11	28	0.59
Non-Cytoplasmic	29	34	0.65
Transmembrane Helix	35	58	0.89
Cytoplasmic	59	74	0.69
Transmembrane Helix	75	91	0.64
Non-Cytoplasmic	92	536	0.80