YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XXT1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEKCIGAHR FRRLQRFMRQ GKVTILCLVL TVIVLRGTIG AGKFGTPEKD IEEIREHFFY  60
   61 TRKRGEPHRV LVEVSSKTTS SEDGGNGGNS YETFDINKLF VDEGDEEKSR DRTNKPYSLG 120
  121 PKISDWDEQR RDWLKQNPSF PNFVAPNKPR VLLVTGSAPK PCENPVGDHY LLKSIKNKID 180
  181 YCRIHGIEIF YNMALLDAEM AGFWAKLPLI RKLLLSHPEI EFLWWMDSDA MFTDMVFELP 240
  241 WERYKDYNLV MHGWNEMVYD QKNWIGLNTG SFLLRNSQWS LDLLDAWAPM GPKGKIREEA 300
  301 GKVLTRELKD RPAFEADDQS AMVYLLATER EKWGGKVYLE SGYYLHGYWG ILVDRYEEMI 360
  361 ENHKPGFGDH RWPLVTHFVG CKPCGKFGDY PVERCLRQMD RAFNFGDNQI LQMYGFTHKS 420
  421 LGSRRVKPTR NQTDRPLDAK DEFGLLHPPF KAAKLSTTTT

Type	Start	End	Confidence
Signal Peptide	1	40	0.67
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	460	0.99