YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSLA9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV  60
   61 YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL IQIPMFNERE VYQLSIGAAC 120
  121 GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM 180
  181 KKSYVKSCDY VAIFDADFQP EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE 240
  241 MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG 300
  301 WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY 360
  361 SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY IPSVITLLNA VGTPRSLHLM 420
  421 VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR 480
  481 IHVLELGVGM YLLFVGCYDA FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.60
Transmembrane Helix	36	57	0.58
Cytoplasmic	58	367	0.83
Transmembrane Helix	368	388	0.90
Non-Cytoplasmic	389	398	0.76
Transmembrane Helix	399	426	0.71
Cytoplasmic	427	480	0.96
Transmembrane Helix	481	502	0.91
Non-Cytoplasmic	503	509	0.78
Transmembrane Helix	510	530	0.94
Cytoplasmic	531	533	0.84