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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PMTK_ARATH
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSGKQSSQP EKGTSRILSL TVLFIAFCGF SFYLGGIFCS ERDKIVAKDV TRTTTKAVAS  60
   61 PKEPTATPIQ IKSVSFPECG SEFQDYTPCT DPKRWKKYGV HRLSFLERHC PPVYEKNECL 120
  121 IPPPDGYKPP IRWPKSREQC WYRNVPYDWI NKQKSNQHWL KKEGDKFHFP GGGTMFPRGV 180
  181 SHYVDLMQDL IPEMKDGTVR TAIDTGCGVA SWGGDLLDRG ILSLSLAPRD NHEAQVQFAL 240
  241 ERGIPAILGI ISTQRLPFPS NAFDMAHCSR CLIPWTEFGG IYLLEIHRIV RPGGFWVLSG 300
  301 PPVNYNRRWR GWNTTMEDQK SDYNKLQSLL TSMCFKKYAQ KDDIAVWQKL SDKSCYDKIA 360
  361 KNMEAYPPKC DDSIEPDSAW YTPLRPCVVA PTPKVKKSGL GSIPKWPERL HVAPERIGDV 420
  421 HGGSANSLKH DDGKWKNRVK HYKKVLPALG TDKIRNVMDM NTVYGGFSAA LIEDPIWVMN 480
  481 VVSSYSANSL PVVFDRGLIG TYHDWCEAFS TYPRTYDLLH LDSLFTLESH RCEMKYILLE 540
  541 MDRILRPSGY VIIRESSYFM DAITTLAKGI RWSCRREETE YAVKSEKILV CQKKLWFSSN 600
  601 QTS

YRC Informatics Platform - Version 3.0
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