YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAE5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHLDDLPST PGKYKTDKVP PYGILHHHRY LRLSKLTLWA SLFLALFLFY LVLSPPPSPS  60
   61 RRNLNDSSSI SAAKYGGSHW EKQVRKSARP RSHGGLTVLV TGASGFVGTH VSIALRRRGD 120
  121 GVLGLDNFNR YYDPKLKRAR QGLLERSGVF VVEGDINDAV LLRKLFDVVL FTHVMHLAAQ 180
  181 AGVRYAMQNP GSYVNSNIAG FVNLLEVSKS ANPQPAIVWA SSSSVYGLNS KVPFSEKDRT 240
  241 DQPASLYAAT KKAGEGIAHT YNHIYGLSLT GLRFFTVYGP WGRPDMAYFF FTKDILKGKT 300
  301 ITVFESPDKG SVARDFTYID DIVKGCLGAL DTAEKSTGSG GKKKGPAMFR IYNLGNTSPV 360
  361 PVTKLVTILE KLLKMKAKKK IMPLPRNGDV EFTHANITLA QAELGYKPAV DLETGLKKFV 420
  421 KWYMGFYTGS KKKSSW

Type	Start	End	Confidence
Cytoplasmic	1	35	0.86
Transmembrane Helix	36	54	0.95
Non-Cytoplasmic	55	436	0.90