YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.65
Transmembrane Helix	37	60	0.80
Non-Cytoplasmic	61	90	0.57
Transmembrane Helix	91	110	0.82
Cytoplasmic	111	129	0.66
Transmembrane Helix	130	153	0.79
Non-Cytoplasmic	154	156	0.47
Transmembrane Helix	157	175	0.76
Cytoplasmic	176	180	0.48
Transmembrane Helix	181	203	0.85
Non-Cytoplasmic	204	212	0.56
Transmembrane Helix	213	235	0.84
Cytoplasmic	236	278	0.54
Transmembrane Helix	279	303	0.77
Non-Cytoplasmic	304	320	0.57
Transmembrane Helix	321	344	0.71
Cytoplasmic	345	359	0.66
Transmembrane Helix	360	380	0.83
Non-Cytoplasmic	381	386	0.60
Transmembrane Helix	387	408	0.92
Cytoplasmic	409	415	0.74
Transmembrane Helix	416	436	0.89
Non-Cytoplasmic	437	457	0.84
Transmembrane Helix	458	480	0.85
Cytoplasmic	481	524	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVKPEEIS HPPMDQLQGL EYCIDSNPPW GEAIALGFEH YILALGTAVM IPSILVPMMG  60
   61 GDDGDKVRVV QTLLFLQGVN TLLQTLFGTR LPTVIGGSYA FMVPIISIIH DSSLTRIEDP 120
  121 QLRFLSTMRA VQGAIIVASS VQIILGFSQM WAICSRFFSP IGMVPVIALT GFGLFNRGFP 180
  181 VVGNCVEIGL PMLILFVIFS QYLKNFQFRQ FPVVERFALI IALIIVWAYA HVLTASGAYK 240
  241 HRPHQTQLNC RTDMSNLISS APWIKIPYPL QWGAPSFDAG HAFAMMAAVL VSLIESTGAF 300
  301 KAAARLASAT PPPPHVLSRG IGWQGIGILL NGLFGTLSGS SVSVENIGLL GSTRVGSRRV 360
  361 IQISAGFMIF FSMLGKFGAL FASIPFTIFA AVYCVLFGLV ASVGLSFLQF TNMNSLRNLF 420
  421 IVGVSLFLGL SIPEYFRDFS MKALHGPAHT NAGWFNDFLN TIFLSSPMVA LMVAVFLDNT 480
  481 LDYKETARDR GLPWWAKFRT FKGDSRNEEF YTLPFNLNRF FPPS