YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6730737, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.98
Transmembrane Helix	76	96	0.93
Non-Cytoplasmic	97	104	0.67
Transmembrane Helix	105	127	0.88
Cytoplasmic	128	155	0.87
Transmembrane Helix	156	173	0.90
Non-Cytoplasmic	174	199	0.78
Transmembrane Helix	200	217	0.96
Cytoplasmic	218	227	0.73
Transmembrane Helix	228	250	0.90
Non-Cytoplasmic	251	267	0.94
Transmembrane Helix	268	289	0.91
Cytoplasmic	290	307	0.94
Transmembrane Helix	308	330	0.92
Non-Cytoplasmic	331	355	0.95
Transmembrane Helix	356	377	0.89
Cytoplasmic	378	398	0.93
Transmembrane Helix	399	418	0.94
Non-Cytoplasmic	419	425	0.68
Transmembrane Helix	426	448	0.87
Cytoplasmic	449	460	0.92
Transmembrane Helix	461	482	0.93
Non-Cytoplasmic	483	489	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSYSVISK TSYVELQKPT VNGKPRNKLL PSDEESFVND FDDARNGVGG EDADDLDFDV  60
   61 ADYPLVHGKS SNQGSGIYGA VFNLTTSIIG AGIMALPATM KVLGLVLGFV LIILMALLSE 120
  121 ISVELLVRFS VLYKSKSYGE VVQFALGKTA RVLSEICIIV NNGGVLVVYL IIMGDVMSGS 180
  181 LHHIGVLDQW LGNGFWDHRK VLILIVMVIF LAPLCALNKI DSLSVTSAAS VALAVVFVVV 240
  241 CFVVATIKLI EGTIDPPRLS PDFGSKQAIL DLLVVIPIMS NAYVCHFNVQ PIYNELEGRS 300
  301 PHKMNRVGRI TTAICVVVYA STAVSGYLLF GKDTESDILT NFDQDLGIRF SSAVNYIVRI 360
  361 GYILHLVLVF PVIHFSLRET VNTLLFEGSP PLSESKKRSL GLTVVLLALI YIGSTMIPNI 420
  421 WTAFKFTGAT SAVSLGFTFP ALIALRLGKQ SNSLSFVERS VSWLMLILAV VVSIVGTIGN 480
  481 IYSLESKSD