YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.91
Transmembrane Helix	23	43	0.92
Non-Cytoplasmic	44	80	0.95
Transmembrane Helix	81	102	0.87
Cytoplasmic	103	109	0.75
Transmembrane Helix	110	129	0.88
Non-Cytoplasmic	130	134	0.66
Transmembrane Helix	135	157	0.80
Cytoplasmic	158	168	0.77
Transmembrane Helix	169	192	0.87
Non-Cytoplasmic	193	199	0.74
Transmembrane Helix	200	221	0.94
Cytoplasmic	222	282	0.86
Transmembrane Helix	283	305	0.83
Non-Cytoplasmic	306	317	0.75
Transmembrane Helix	318	341	0.88
Cytoplasmic	342	347	0.85
Transmembrane Helix	348	370	0.82
Non-Cytoplasmic	371	386	0.70
Transmembrane Helix	387	409	0.90
Cytoplasmic	410	424	0.78
Transmembrane Helix	425	444	0.92
Non-Cytoplasmic	445	450	0.71
Transmembrane Helix	451	472	0.92
Cytoplasmic	473	514	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGFVSQTP GVRNYNYKLT PKVFVTCFIG AFGGLIFGYD LGISGGVTSM EPFLEEFFPY  60
   61 VYKKMKSAHE NEYCRFDSQL LTLFTSSLYV AALVSSLFAS TITRVFGRKW SMFLGGFTFF 120
  121 IGSAFNGFAQ NIAMLLIGRI LLGFGVGFAN QSVPVYLSEM APPNLRGAFN NGFQVAIIFG 180
  181 IVVATIINYF TAQMKGNIGW RISLGLACVP AVMIMIGALI LPDTPNSLIE RGYTEEAKEM 240
  241 LQSIRGTNEV DEEFQDLIDA SEESKQVKHP WKNIMLPRYR PQLIMTCFIP FFQQLTGINV 300
  301 ITFYAPVLFQ TLGFGSKASL LSAMVTGIIE LLCTFVSVFT VDRFGRRILF LQGGIQMLVS 360
  361 QIAIGAMIGV KFGVAGTGNI GKSDANLIVA LICIYVAGFA WSWGPLGWLV PSEISPLEIR 420
  421 SAAQAINVSV NMFFTFLVAQ LFLTMLCHMK FGLFFFFAFF VVIMTIFIYL MLPETKNVPI 480
  481 EEMNRVWKAH WFWGKFIPDE AVNMGAAEMQ QKSV