YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.97
Transmembrane Helix	23	45	0.90
Non-Cytoplasmic	46	84	0.96
Transmembrane Helix	85	106	0.89
Cytoplasmic	107	113	0.82
Transmembrane Helix	114	134	0.90
Non-Cytoplasmic	135	139	0.69
Transmembrane Helix	140	161	0.86
Cytoplasmic	162	170	0.80
Transmembrane Helix	171	191	0.86
Non-Cytoplasmic	192	202	0.77
Transmembrane Helix	203	224	0.90
Cytoplasmic	225	285	0.96
Transmembrane Helix	286	308	0.90
Non-Cytoplasmic	309	322	0.80
Transmembrane Helix	323	344	0.92
Cytoplasmic	345	351	0.87
Transmembrane Helix	352	373	0.93
Non-Cytoplasmic	374	383	0.85
Transmembrane Helix	384	406	0.90
Cytoplasmic	407	425	0.83
Transmembrane Helix	426	445	0.93
Non-Cytoplasmic	446	451	0.71
Transmembrane Helix	452	474	0.89
Cytoplasmic	475	513	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGSFGPTG VAKERAEQYQ GKVTSYVIIA CLVAAIGGSI FGYDIGISGG VTSMDEFLEE  60
   61 FFHTVYEKKK QAHESNYCKY DNQGLAAFTS SLYLAGLVST LVASPITRNY GRRASIVCGG 120
  121 ISFLIGSGLN AGAVNLAMLL AGRIMLGVGI GFGNQAVPLY LSEVAPTHLR GGLNMMFQLA 180
  181 TTIGIFTANM VNYGTQQLKP WGWRLSLGLA AFPALLMTLG GYFLPETPNS LVERGLTERG 240
  241 RRVLVKLRGT ENVNAELQDM VDASELANSI KHPFRNILQK RHRPQLVMAI CMPMFQILTG 300
  301 INSILFYAPV LFQTMGFGGN ASLYSSALTG AVLVLSTFIS IGLVDRLGRR ALLITGGIQM 360
  361 IICQVIVAVI LGVKFGDNQE LSKGYSVIVV IFICLFVVAF GWSWGPLGWT IPSEIFPLET 420
  421 RSAGQSITVA VNLLFTFIIA QAFLGLLCAF KFGIFLFFAG WVTVMTIFVY FLLPETKGVP 480
  481 IEEMTLLWSK HWFWKKVLPD ATNLEDESKN VSV