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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SD31_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMLRALLLC LSLVFFLAFQ IVVSEIQLGS KLVVGENTLW VSNNGDFALG FFNPPGLLNR  60
   61 FSIGIWFNSN SIPYDQRKVV WVAGAGVVVS DNSSYFELTR NGELVLFDSL LGVPVWNSKT 120
  121 NRFSVSSALL RDDGNLVLLK DREEIVWQSF GTPTDTLLPN QKFPAFEMLR AASENSRSSY 180
  181 YSLHLEDSGR LELRWESNIT FWSSGNEVVK KKKKKKNIGA VLTSEGALFL EDQDLMRPVW 240
  241 SVFGEDHNDT VKFRFLRLDR DGNLRMYSWN EDSRIWKPVW QAVENQCRVF ATCGSQVCSF 300
  301 NSSGYTECNC PFNAFVSVSD PKCLVPYQKP GCKSGFNMVK FKNLELYGIY PANDSVISQI 360
  361 SSQRCKKLCL ENSACTAVTY TNDGEPQCRM KLTRYISGYS DPSLSSISYV KTCLDPIAVD 420
  421 PNNVSKESPV TVTKSHSICI PCLVGATSTT LVLFLGFQLG IVVYIYRRKK KLAKKKAERF 480
  481 SKATNPKGVM IFSVDEIKAM TDNFDNNIGP QIFKGVMPEN ELVAVKEVEA TLTEERKFRS 540
  541 SASKIGTMHH KNLANLEGYC CELGRRFLVY EYAKNGSILD HIVDPLRSKK LTWRIRTDTC 600
  601 LSVAKALCYL HMECREFVSH GNLNCGNILL GEDLEAKLTE YGFGLCAADK DVEDFGKTVL 660
  661 ALITGRYEPE GVVSEWVYRE WIGGRKETVV DKGLEGCFDV EELERVLRIS FWCVQTDERL 720
  721 RPSMGEVVKV LEGTLSVDPP PPPFACARSS PTNSSESSQS LYEP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle