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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ERECT_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.29
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFRDIVLL GFLFCLSLVA TVTSEEGATL LEIKKSFKDV NNVLYDWTTS PSSDYCVWRG  60
   61 VSCENVTFNV VALNLSDLNL DGEISPAIGD LKSLLSIDLR GNRLSGQIPD EIGDCSSLQN 120
  121 LDLSFNELSG DIPFSISKLK QLEQLILKNN QLIGPIPSTL SQIPNLKILD LAQNKLSGEI 180
  181 PRLIYWNEVL QYLGLRGNNL VGNISPDLCQ LTGLWYFDVR NNSLTGSIPE TIGNCTAFQV 240
  241 LDLSYNQLTG EIPFDIGFLQ VATLSLQGNQ LSGKIPSVIG LMQALAVLDL SGNLLSGSIP 300
  301 PILGNLTFTE KLYLHSNKLT GSIPPELGNM SKLHYLELND NHLTGHIPPE LGKLTDLFDL 360
  361 NVANNDLEGP IPDHLSSCTN LNSLNVHGNK FSGTIPRAFQ KLESMTYLNL SSNNIKGPIP 420
  421 VELSRIGNLD TLDLSNNKIN GIIPSSLGDL EHLLKMNLSR NHITGVVPGD FGNLRSIMEI 480
  481 DLSNNDISGP IPEELNQLQN IILLRLENNN LTGNVGSLAN CLSLTVLNVS HNNLVGDIPK 540
  541 NNNFSRFSPD SFIGNPGLCG SWLNSPCHDS RRTVRVSISR AAILGIAIGG LVILLMVLIA 600
  601 ACRPHNPPPF LDGSLDKPVT YSTPKLVILH MNMALHVYED IMRMTENLSE KYIIGHGASS 660
  661 TVYKCVLKNC KPVAIKRLYS HNPQSMKQFE TELEMLSSIK HRNLVSLQAY SLSHLGSLLF 720
  721 YDYLENGSLW DLLHGPTKKK TLDWDTRLKI AYGAAQGLAY LHHDCSPRII HRDVKSSNIL 780
  781 LDKDLEARLT DFGIAKSLCV SKSHTSTYVM GTIGYIDPEY ARTSRLTEKS DVYSYGIVLL 840
  841 ELLTRRKAVD DESNLHHLIM SKTGNNEVME MADPDITSTC KDLGVVKKVF QLALLCTKRQ 900
  901 PNDRPTMHQV TRVLGSFMLS EQPPAATDTS ATLAGSCYVD EYANLKTPHS VNCSSMSASD 960
  961 AQLFLRFGQV ISQNSE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle