YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR34_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.91
Transmembrane Helix	23	46	0.74
Non-Cytoplasmic	47	63	0.75
Transmembrane Helix	64	85	0.91
Cytoplasmic	86	92	0.73
Transmembrane Helix	93	116	0.88
Non-Cytoplasmic	117	132	0.84
Transmembrane Helix	133	153	0.84
Cytoplasmic	154	171	0.91
Transmembrane Helix	172	194	0.93
Non-Cytoplasmic	195	203	0.79
Transmembrane Helix	204	225	0.90
Cytoplasmic	226	297	0.97
Transmembrane Helix	298	320	0.92
Non-Cytoplasmic	321	340	0.89
Transmembrane Helix	341	362	0.91
Cytoplasmic	363	380	0.87
Transmembrane Helix	381	400	0.92
Non-Cytoplasmic	401	419	0.87
Transmembrane Helix	420	441	0.89
Cytoplasmic	442	452	0.89
Transmembrane Helix	453	474	0.89
Non-Cytoplasmic	475	491	0.83
Transmembrane Helix	492	511	0.96
Cytoplasmic	512	515	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIEMEEKFE DWRGKEAISG KHGGIKAAFI ACVVETMENM VFLACSTNFM MYFTKSMNYS  60
   61 TPKAATMVTN FVGTSFLLTI FGGFVADSFL TRFAAFVLFG SIELLGLIML TLQAHITKLQ 120
  121 PQGGKKPSTP QSTVLFTGLY AIAIGVGGVK GSLPAHGGDQ IGTRNQRLIS GFFNWYFFSV 180
  181 CLGGFLAVTL MVWIEENIGW SSSFTISTAV LASAIFVFVA GCPMYRFKRP AGSPLTRIVN 240
  241 VFVSAARNRN RFVTDAEVVT QNHNSTDKSI HHNKFKFLNK AKLNNKISAT QVEETRTFLA 300
  301 LLPIFGSTII MNCCVAQMGT FSVQQGMVTN RKLSRSFEIP VASLNAIPLL CMLSSLALYE 360
  361 LFGKRILSNS ERSSSFNLKR IGYGLALTSI SMAVAAIVEV KRKHEAVHNN IKISVFWLEL 420
  421 QFVMLSLSDM LTVGGMLEFF FRESPASMRS MSTALGWCST AMGFFLSSVL VEVVNGITGW 480
  481 LRDDLNESRL ELFYLVLCVL NTLNLFNYIF WAKRY