YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CPR5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALLLPPSP EPQNQITNPA NSKPNHQSGD VHKDETMMMK KKKDTNPSNL EKRKLKGKKK  60
   61 EIMDNDEASS SYCSTSSTSN SNSTKRVTRV VHRLRNPMRL GMARRSVGER QAEKLAKPLG 120
  121 FSLAAFANMV IARKNAAGQN VYVDDLVEIF ATLVEESLAN VYGNKLGSFA TNFEQTFSST 180
  181 LKILKLTNEC ANPHQSNNND GGSCNLDRST IDGCSDTELF ERETSSATSA YEVMQGSATA 240
  241 TSLMNELALF EETLQLSCVP PRSSAMALTT DERFLKEQTR ANDLKTVEIG LQIRELRCKE 300
  301 TALGLKFESN NLGKAALELD VSKAAFRAEK FKTELEDTRK EEMVTRIMDW LLVSVFSMLA 360
  361 SMVLGVYNFS IKRIEDATSV CDQSEEKSSS WWVPKQVSSI NSGFNTFICR VRVWVQIFFG 420
  421 VLMIIVFTYF LNKRSSGTKQ TMPISFIVLF LGIFCGVSGK LCVDTLGGDG KLWLIVWEVF 480
  481 CLLQFVANVF TLALYGLMFG PINVTQETRS NRCNSMFPYW ARRSVVYVVI LFVLPVINGL 540
  541 LPFATFGEWR DFAMYHLHGG SDYA

Type	Start	End	Confidence
Cytoplasmic	1	347	0.80
Transmembrane Helix	348	369	0.82
Non-Cytoplasmic	370	412	0.86
Transmembrane Helix	413	431	0.97
Cytoplasmic	432	441	0.81
Transmembrane Helix	442	463	0.91
Non-Cytoplasmic	464	479	0.75
Transmembrane Helix	480	504	0.83
Cytoplasmic	505	524	0.85
Transmembrane Helix	525	546	0.95
Non-Cytoplasmic	547	564	0.89