YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRT22_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.90
Transmembrane Helix	63	86	0.89
Non-Cytoplasmic	87	97	0.80
Transmembrane Helix	98	117	0.65
Cytoplasmic	118	122	0.48
Transmembrane Helix	123	146	0.79
Non-Cytoplasmic	147	151	0.46
Transmembrane Helix	152	174	0.86
Cytoplasmic	175	181	0.48
Transmembrane Helix	182	204	0.79
Non-Cytoplasmic	205	223	0.50
Transmembrane Helix	224	247	0.82
Cytoplasmic	248	268	0.53
Transmembrane Helix	269	290	0.56
Non-Cytoplasmic	291	309	0.78
Transmembrane Helix	310	329	0.93
Cytoplasmic	330	349	0.77
Transmembrane Helix	350	370	0.93
Non-Cytoplasmic	371	375	0.72
Transmembrane Helix	376	398	0.90
Cytoplasmic	399	405	0.67
Transmembrane Helix	406	429	0.85
Non-Cytoplasmic	430	438	0.73
Transmembrane Helix	439	459	0.93
Cytoplasmic	460	522	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSTDEPGSS MHGVTGREQS YAFSVDGSEP TNTKKKYNLP VDAEDKATVF KLFSFAKPHM  60
   61 RTFHLSWISF STCFVSTFAA APLIPIIREN LNLTKHDIGN AGVASVSGSI FSRLVMGAVC 120
  121 DLLGPRYGCA FLVMLSAPTV FSMSFVSDAA GFITVRFMIG FCLATFVSCQ YWMSTMFNSQ 180
  181 IIGLVNGTAA GWGNMGGGIT QLLMPIVYEI IRRCGSTAFT AWRIAFFVPG WLHIIMGILV 240
  241 LTLGQDLPGG NRAAMEKAGE VAKDKFGKIL WYAVTNYRTW IFVLLYGYSM GVELSTDNVI 300
  301 AEYFFDRFHL KLHTAGIIAA CFGMANFFAR PAGGWASDIA AKRFGMRGRL WTLWIIQTSG 360
  361 GLFCVWLGRA NTLVTAVVSM VLFSLGAQAA CGATFAIVPF VSRRALGIIS GLTGAGGNFG 420
  421 SGLTQLVFFS TSRFTTEEGL TWMGVMIVAC TLPVTLIHFP QWGSMFFPPS NDSVDATEHY 480
  481 YVGEYSKEEQ QIGMHLKSKL FADGAKTEGG SSVHKGNATN NA