YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAE3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP  60
   61 SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG FVGTHVSAAL KRRGDGVLGL 120
  121 DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY 180
  181 AMENPSSYVH SNIAGFVNLL EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS 240
  241 LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE 300
  301 GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL 360
  361 VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG YKPTTDLQTG LKKFARWYLG 420
  421 YYNGGKKAAS

Type	Start	End	Confidence
Cytoplasmic	1	29	0.68
Transmembrane Helix	30	49	0.90
Non-Cytoplasmic	50	430	0.89