YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AAPT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.91
Transmembrane Helix	44	68	0.82
Non-Cytoplasmic	69	79	0.79
Transmembrane Helix	80	97	0.61
Cytoplasmic	98	113	0.62
Transmembrane Helix	114	135	0.46
Non-Cytoplasmic	136	140	0.68
Transmembrane Helix	141	161	0.79
Cytoplasmic	162	175	0.69
Transmembrane Helix	176	196	0.85
Non-Cytoplasmic	197	219	0.86
Transmembrane Helix	220	241	0.91
Cytoplasmic	242	251	0.84
Transmembrane Helix	252	272	0.94
Non-Cytoplasmic	273	281	0.79
Transmembrane Helix	282	305	0.88
Cytoplasmic	306	318	0.82
Transmembrane Helix	319	338	0.87
Non-Cytoplasmic	339	347	0.76
Transmembrane Helix	348	370	0.80
Cytoplasmic	371	389	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYIGAHGVA ALHRYKYSGV DHSYLAKYVL QPFWTRFVKV FPLWMPPNMI TLMGFMFLVT  60
   61 SSLLGYIYSP QLDSPPPRWV HFAHGLLLFL YQTFDAVDGK QARRTNSSSP LGELFDHGCD 120
  121 ALACAFEAMA FGSTAMCGRD TFWFWVISAI PFYGATWEHY FTNTLILPVI NGPTEGLALI 180
  181 FVSHFFTAIV GAEWWAQQLG QSIPLFSWVP FVNEIQTSRA VLYMMIAFAV IPTVAFNVTN 240
  241 VYKVVRSRNG SMVLALAMLY PFVVLLGGVL IWDYLSPINL IATYPHLVVL GTGLAFGFLV 300
  301 GRMILAHLCD EPKGLKTNMC MSLLYLPFAL ANALTARLNA GVPLVDELWV LLGYCIFTVS 360
  361 LYLHFATSVI HEITEALGIY CFRITRKEA