YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AAP2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.95
Transmembrane Helix	52	74	0.88
Non-Cytoplasmic	75	78	0.66
Transmembrane Helix	79	99	0.72
Cytoplasmic	100	133	0.63
Transmembrane Helix	134	159	0.78
Non-Cytoplasmic	160	200	0.60
Transmembrane Helix	201	225	0.86
Cytoplasmic	226	293	0.81
Transmembrane Helix	294	315	0.92
Non-Cytoplasmic	316	331	0.92
Transmembrane Helix	332	354	0.88
Cytoplasmic	355	396	0.94
Transmembrane Helix	397	416	0.89
Non-Cytoplasmic	417	420	0.73
Transmembrane Helix	421	442	0.83
Cytoplasmic	443	453	0.86
Transmembrane Helix	454	479	0.85
Non-Cytoplasmic	480	493	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGETAAANNH RHHHHHGHQV FDVASHDFVP PQPAFKCFDD DGRLKRTGTV WTASAHIITA  60
   61 VIGSGVLSLA WAIAQLGWIA GPAVMLLFSL VTLYSSTLLS DCYRTGDAVS GKRNYTYMDA 120
  121 VRSILGGFKF KICGLIQYLN LFGIAIGYTI AASISMMAIK RSNCFHKSGG KDPCHMSSNP 180
  181 YMIVFGVAEI LLSQVPDFDQ IWWISIVAAV MSFTYSAIGL ALGIVQVAAN GVFKGSLTGI 240
  241 SIGTVTQTQK IWRTFQALGD IAFAYSYSVV LIEIQDTVRS PPAESKTMKK ATKISIAVTT 300
  301 IFYMLCGSMG YAAFGDAAPG NLLTGFGFYN PFWLLDIANA AIVVHLVGAY QVFAQPIFAF 360
  361 IEKSVAERYP DNDFLSKEFE IRIPGFKSPY KVNVFRMVYR SGFVVTTTVI SMLMPFFNDV 420
  421 VGILGALGFW PLTVYFPVEM YIKQRKVEKW STRWVCLQML SVACLVISVV AGVGSIAGVM 480
  481 LDLKVYKPFK STY