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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PXC1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKPLLLPL LLLLHLSITL AQNDTNALTL FRLQTDTHGN LAGNWTGSDA CTSSWQGVSC  60
   61 SPSSHRVTEL SLPSLSLRGP LTSLSSLDQL RLLDLHDNRL NGTVSPLTNC KNLRLVYLAG 120
  121 NDLSGEIPKE ISFLKRMIRL DLSDNNIRGV IPREILGFTR VLTIRIQNNE LTGRIPDFSQ 180
  181 MKSLLELNVS FNELHGNVSD GVVKKFGDLS FSGNEGLCGS DPLPVCTITN DPESSNTDQI 240
  241 VPSNPTSIPH SPVSVREPEI HSHRGIKPGI IAAVIGGCVA VIVLVSFGFA FCCGRLDRNG 300
  301 ERSKSGSVET GFVGGGEGKR RSSYGEGGES DATSATDRSR LVFFERRKQF ELDDLLKASA 360
  361 EMLGKGSLGT VYKAVLDDGS TTVAVKRLKD ANPCPRKEFE QYMEIIGRLK HQNVVKLRAY 420
  421 YYAKEEKLLV YEYLPNGSLH SLLHGNRGPG RIPLDWTTRI SLMLGAARGL AKIHDEYSIS 480
  481 KIPHGNIKSS NVLLDRNGVA LIADFGLSLL LNPVHAIARL GGYRAPEQSE IKRLSQKADV 540
  541 YSFGVLLLEV LTGKAPSIFP SPSRPRSAAS VAVEEEEEAV VDLPKWVRSV VKEEWTAEVF 600
  601 DPELLRYKNI EEEMVAMLHI GLACVVPQPE KRPTMAEVVK MVEEIRVEQS PVGEDFDESR 660
  661 NSMSPSLATT DG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle