YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	INT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.98
Transmembrane Helix	27	49	0.83
Non-Cytoplasmic	50	71	0.79
Transmembrane Helix	72	91	0.95
Cytoplasmic	92	99	0.86
Transmembrane Helix	100	118	0.96
Non-Cytoplasmic	119	124	0.78
Transmembrane Helix	125	146	0.93
Cytoplasmic	147	157	0.81
Transmembrane Helix	158	178	0.92
Non-Cytoplasmic	179	186	0.81
Transmembrane Helix	187	208	0.92
Cytoplasmic	209	274	0.96
Transmembrane Helix	275	296	0.84
Non-Cytoplasmic	297	312	0.88
Transmembrane Helix	313	335	0.94
Cytoplasmic	336	342	0.95
Transmembrane Helix	343	363	0.95
Non-Cytoplasmic	364	452	0.97
Transmembrane Helix	453	477	0.87
Cytoplasmic	478	486	0.84
Transmembrane Helix	487	507	0.89
Non-Cytoplasmic	508	518	0.72
Transmembrane Helix	519	541	0.91
Cytoplasmic	542	580	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGIIHGGA DESAFKECFS LTWKNPYVLR LAFSAGIGGL LFGYDTGVIS GALLYIRDDF  60
   61 KSVDRNTWLQ EMIVSMAVAG AIVGAAIGGW ANDKLGRRSA ILMADFLFLL GAIIMAAAPN 120
  121 PSLLVVGRVF VGLGVGMASM TAPLYISEAS PAKIRGALVS TNGFLITGGQ FLSYLINLAF 180
  181 TDVTGTWRWM LGIAGIPALL QFVLMFTLPE SPRWLYRKGR EEEAKAILRR IYSAEDVEQE 240
  241 IRALKDSVET EILEEGSSEK INMIKLCKAK TVRRGLIAGV GLQVFQQFVG INTVMYYSPT 300
  301 IVQLAGFASN RTALLLSLVT AGLNAFGSII SIYFIDRIGR KKLLIISLFG VIISLGILTG 360
  361 VFYEAATHAP AISSLETQRF NNISCPDYKS AMNTNAWDCM TCLKASSPSC GYCSSPIGKE 420
  421 HPGACWISDD SVKDLCHNEN RLWYTRGCPS NFGWFALLGL GLYIIFFSPG MGTVPWIVNS 480
  481 EIYPLRFRGI CGGIAATANW ISNLIVAQSF LSLTEAIGTS WTFLIFGVIS VIALLFVMVC 540
  541 VPETKGMPME EIEKMLERRS MEFKFWKKKS KLVEKQNQSA