YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSFHFINE ALLITQTFIT FHQFLVASAC VLIAVFGYYF FKPRCIIYLI DFSCYQPPDF  60
   61 LRAPVSNFIE HLTISGVFDQ ESLDLQQKIL ERSGISDDAS VPATVHEIPP NASISAAREE 120
  121 THEILFAIVQ DLFSKHEIDP KSIDILVSNC SLFCPSPSIT SMIINKFGMR SDIKSFSLSG 180
  181 MGCSAGILSV NLVKDLMKIH GDSLALVLSM EAVSPNGYRG KCKSMLIANT IFRMGGAAIL 240
  241 LSNRKQDSHK AKYKLQHIIR THVGSDTESY ESVMQQVDEE GKVGVALSKQ LVRVASKALK 300
  301 INVVQLGPRV LPYSEQLKYI ISFIQRKWGM HKEIYTPNFK KAFEHFCIHA GGRAIIEGVE 360
  361 KHLKLDKEDV EASRSTLYRY GNTSSSSLWY ELQYLEAKGR MKMGDKVWQI GFGSGFKANS 420
  421 AVWKCISEID SRGRNAWSDR IHLYPVCGDT SSALKTELLS

Type	Start	End	Confidence
Cytoplasmic	1	18	0.48
Transmembrane Helix	19	41	0.90
Non-Cytoplasmic	42	460	0.66