YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRT24_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.88
Transmembrane Helix	65	88	0.88
Non-Cytoplasmic	89	99	0.81
Transmembrane Helix	100	119	0.70
Cytoplasmic	120	128	0.47
Transmembrane Helix	129	149	0.84
Non-Cytoplasmic	150	154	0.44
Transmembrane Helix	155	176	0.79
Cytoplasmic	177	183	0.49
Transmembrane Helix	184	206	0.81
Non-Cytoplasmic	207	225	0.53
Transmembrane Helix	226	246	0.89
Cytoplasmic	247	270	0.55
Transmembrane Helix	271	290	0.53
Non-Cytoplasmic	291	311	0.86
Transmembrane Helix	312	331	0.92
Cytoplasmic	332	351	0.87
Transmembrane Helix	352	372	0.94
Non-Cytoplasmic	373	378	0.80
Transmembrane Helix	379	400	0.94
Cytoplasmic	401	409	0.73
Transmembrane Helix	410	431	0.91
Non-Cytoplasmic	432	440	0.85
Transmembrane Helix	441	461	0.93
Cytoplasmic	462	527	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP  60
   61 HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV GNAGVASVSG SIFSRLVMGA 120
  121 VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN 180
  181 GQIIGLVNGT AAGWGNMGGG VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI 240
  241 LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN 300
  301 VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT 360
  361 LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII PFISRRSLGI ISGLTGAGGN 420
  421 FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE 480
  481 EYYYMKEWTE TEKRKGMHEG SLKFAVNSRS ERGRRVASAP SPPPEHV