YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3128169, gi\|7...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMTGFIVAM MIAAAIFTTC VDGNKFFYHR EIKVLRHLKR FNKPALKSIK SEDGDVIDCV  60
   61 PITNQPAFDH HLLKNHTIQM RPSFYPVSDS TYTKREAKAV TQVWHKAGEC PKNTVPIRRT 120
  121 KKEDLLRPKS IRSFGRKSHQ SIPRTTTFDP TLGHQYALMG VRNGKFYGTE VAINLWKPYV 180
  181 QIPKEFSLAQ TWVVSGNGSS LNTIEAGWQV YPELYDDNNP RFFVYWTRDG YRKTGCYNLL 240
  241 CSGFVQTSNR YTVGGSITTM SRYRGTQYDL SVLIWKDQKT GNWWLRVNEK DVIGYWPGSL 300
  301 FNSLGREATR VEWGGEIINS KTGGRHTTTD MGSGHFADEG FKKASYFRNL KIVDGTNTLR 360
  361 EPQGLYFFAD KHNCYNVKTG NGGTSWGAHF FYGGPGRNVK CP

Type	Start	End	Confidence
Signal Peptide	1	23	0.91
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	402	0.98