YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.79
Transmembrane Helix	74	92	0.53
Non-Cytoplasmic	93	98	0.46
Transmembrane Helix	99	122	0.85
Cytoplasmic	123	188	0.74
Transmembrane Helix	189	211	0.92
Non-Cytoplasmic	212	216	0.91
Transmembrane Helix	217	239	0.92
Cytoplasmic	240	332	0.98
Transmembrane Helix	333	354	0.90
Non-Cytoplasmic	355	369	0.91
Transmembrane Helix	370	390	0.90
Cytoplasmic	391	409	0.84
Transmembrane Helix	410	431	0.90
Non-Cytoplasmic	432	451	0.85
Transmembrane Helix	452	473	0.70
Cytoplasmic	474	493	0.72
Transmembrane Helix	494	518	0.78
Non-Cytoplasmic	519	538	0.76
Transmembrane Helix	539	561	0.89
Cytoplasmic	562	586	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVEEVGDDY TKDGTVDLRG NRVRRSQTGR WKACSFVVVY EVFERMAYYG ISSNLVIYMT  60
   61 TKLHQGTVKS SNNVTNWVGT SWLTPILGAY VADAHFGRYI TFVISSAIYL LGMALLTLSV 120
  121 SLPGLKPPKC STANVENCEK ASVIQLAVFF GALYTLAIGT GGTKPNISTI GADQFDEFDP 180
  181 KDKIHKHSFF NWWMFSIFFG TFFATTVLVY VQDNVGWAIG YGLSTLGLAF SIFIFLLGTR 240
  241 LYRHKLPMGS PFTKMARVIV ASLRKAREPM SSDSTRFYEL PPMEYASKRA FPIHSTSSLR 300
  301 FLNRASLKTG STHKWRLCTI TEVEETKQML KMLPVLFVTF VPSMMLAQIM TLFIKQGTTL 360
  361 DRRLTNNFSI PPASLLGFTT FSMLVSIVIY DRVFVKFMRK LTGNPRGITL LQRMGIGMIL 420
  421 HILIMIIASI TERYRLKVAA EHGLTHQTAV PIPLSIFTLL PQYVLMGLAD AFIEIAKLEF 480
  481 FYDQAPESMK SLGTSYTSTS MAVGYFMSSI LLSSVSQITK KQGRGWIQNN LNESRLDNYY 540
  541 MFFAVLNLLN FILFLVVIRF YEYRADVTQS ANVEQKEPNM VDNYNE