YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LCAT1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKISSHYSV VIAILVVVTM TSMCQAVGSN VYPLILVPGN GGNQLEVRLD REYKPSSVWC  60
   61 SSWLYPIHKK SGGWFRLWFD AAVLLSPFTR CFSDRMMLYY DPDLDDYQNA PGVQTRVPHF 120
  121 GSTKSLLYLD PRLRDATSYM EHLVKALEKK CGYVNDQTIL GAPYDFRYGL AASGHPSRVA 180
  181 SQFLQDLKQL VEKTSSENEG KPVILLSHSL GGLFVLHFLN RTTPSWRRKY IKHFVALAAP 240
  241 WGGTISQMKT FASGNTLGVP LVNPLLVRRH QRTSESNQWL LPSTKVFHDR TKPLVVTPQV 300
  301 NYTAYEMDRF FADIGFSQGV VPYKTRVLPL TEELMTPGVP VTCIYGRGVD TPEVLMYGKG 360
  361 GFDKQPEIKY GDGDGTVNLA SLAALKVDSL NTVEIDGVSH TSILKDEIAL KEIMKQISII 420
  421 NYELANVNAV NE

Type	Start	End	Confidence
Signal Peptide	1	26	0.97
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	432	0.93