YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAX1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.93
Transmembrane Helix	75	99	0.81
Non-Cytoplasmic	100	127	0.72
Transmembrane Helix	128	150	0.72
Cytoplasmic	151	160	0.51
Transmembrane Helix	161	185	0.84
Non-Cytoplasmic	186	197	0.61
Transmembrane Helix	198	219	0.90
Cytoplasmic	220	233	0.61
Transmembrane Helix	234	257	0.83
Non-Cytoplasmic	258	287	0.61
Transmembrane Helix	288	308	0.90
Cytoplasmic	309	318	0.56
Transmembrane Helix	319	341	0.84
Non-Cytoplasmic	342	355	0.57
Transmembrane Helix	356	380	0.86
Cytoplasmic	381	386	0.55
Transmembrane Helix	387	406	0.84
Non-Cytoplasmic	407	412	0.65
Transmembrane Helix	413	432	0.93
Cytoplasmic	433	463	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGIVTEPWS VAENGNPSIT AKGSSRELRL GRTAHNMSSS SLRKKSDLRV IQKVPYKGLK  60
   61 DFLSNLQEVI LGTKLAILFP AIPAAIICTY CGVSQPWIFG LSLLGLTPLA ERVSFLTEQL 120
  121 AFYTGPTLGG LLNATCGNAT ELIIAILALT NNKVAVVKYS LLGSILSNLL LVLGTSLFCG 180
  181 GIANIRREQR FDRKQADVNF FLLLLGFLCH LLPLLVGYLK NGEASAAVLS DMQLSISRGF 240
  241 SIVMLISYIA YLVFQLWTHR QLFDAQEQED EYDDDVEQET AVISFWSGFA WLVGMTLVIA 300
  301 LLSEYVVATI EEASDKWNLS VSFISIILLP IVGNAAEHAG AVIFAFKNKL DISLGVALGS 360
  361 ATQIGLFVVP LTIIVAWILG INMDLNFGPL ETGCLAVSII ITAFTLQDGS SHYMKGLVLL 420
  421 LCYFIIAICF FVDKLPQKQN AIHLGHQAMN NVVTATGGGV FSS