YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAAT5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.99
Transmembrane Helix	68	90	0.90
Non-Cytoplasmic	91	101	0.79
Transmembrane Helix	102	124	0.86
Cytoplasmic	125	143	0.81
Transmembrane Helix	144	165	0.90
Non-Cytoplasmic	166	194	0.88
Transmembrane Helix	195	213	0.92
Cytoplasmic	214	220	0.80
Transmembrane Helix	221	243	0.91
Non-Cytoplasmic	244	258	0.86
Transmembrane Helix	259	279	0.87
Cytoplasmic	280	290	0.89
Transmembrane Helix	291	313	0.90
Non-Cytoplasmic	314	342	0.92
Transmembrane Helix	343	367	0.85
Cytoplasmic	368	387	0.86
Transmembrane Helix	388	407	0.89
Non-Cytoplasmic	408	413	0.67
Transmembrane Helix	414	434	0.90
Cytoplasmic	435	447	0.77
Transmembrane Helix	448	469	0.94
Non-Cytoplasmic	470	476	0.85
Transmembrane Helix	477	498	0.95
Cytoplasmic	499	505	0.91
Transmembrane Helix	506	527	0.88
Non-Cytoplasmic	528	533	0.69
Transmembrane Helix	534	558	0.83
Cytoplasmic	559	569	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGEERGYWR WSKRDFFPEE SFQSFGSYRA ALSQTCSRFK NRLVSRSDDE NERFELKKQS  60
   61 EHEMKRCLTW WDLVWFGFGS VIGAGIFVLT GQEAHEQAGP AIVLSYVVSG LSAMLSVFCY 120
  121 TEFAVEIPVA GGSFAYLRIE LGDFAAFITA GNILLESIVG TAAVARAWTS YFATLLNRSP 180
  181 NALRIKTDLS SGFNLLDPIA VVVIAASATI ASISTRKTSL LNWIASAINT LVIFFVIIAG 240
  241 FIHADTSNLT PFLPFGPEGV FRAAAVVYFA YGGFDSIATM AEETKNPSRD IPIGLLGSMS 300
  301 IITVIYCLMA LSLSMMQKYT DIDPNAAYSV AFQSVGMKWG KYLVALGALK GMTTVLLVGA 360
  361 LGQARYVTHI ARTHMIPPIF ALVHPKTGTP INANLLVAIP SALIAFFSGL DVLASLLSIS 420
  421 TLFIFTMMPI ALLVRRYYVR QDTPRVHLIK LITCLLFVVV SSMGTSAYWG MQRKGSWIGY 480
  481 TVTVPFWFLG TLGIVFFVPQ QRTPKVWGVP LVPWLPCLSI ATNIFLMGSL GAMAFVRFGV 540
  541 CTLAMLLYYF LLGLHATFDM AHQQIVPRT