YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSSP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.58
Transmembrane Helix	9	28	0.50
Non-Cytoplasmic	29	40	0.62
Transmembrane Helix	41	64	0.83
Cytoplasmic	65	72	0.63
Transmembrane Helix	73	91	0.93
Non-Cytoplasmic	92	97	0.55
Transmembrane Helix	98	120	0.82
Cytoplasmic	121	132	0.63
Transmembrane Helix	133	155	0.87
Non-Cytoplasmic	156	162	0.57
Transmembrane Helix	163	183	0.93
Cytoplasmic	184	509	0.68
Transmembrane Helix	510	526	0.61
Non-Cytoplasmic	527	553	0.81
Transmembrane Helix	554	576	0.88
Cytoplasmic	577	586	0.88
Transmembrane Helix	587	609	0.93
Non-Cytoplasmic	610	615	0.82
Transmembrane Helix	616	637	0.91
Cytoplasmic	638	649	0.81
Transmembrane Helix	650	670	0.91
Non-Cytoplasmic	671	679	0.67
Transmembrane Helix	680	701	0.94
Cytoplasmic	702	734	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGATLVALA ATIGNFLQGW DNATIAGAMV YINKDLNLPT SVQGLVVAMS LIGATVITTC  60
   61 SGPISDWLGR RPMLILSSVM YFVCGLIMLW SPNVYVLCFA RLLNGFGAGL AVTLVPVYIS 120
  121 ETAPPEIRGQ LNTLPQFLGS GGMFLSYCMV FTMSLSDSPS WRAMLGVLSI PSLLYLFLTV 180
  181 FYLPESPRWL VSKGRMDEAK RVLQQLCGRE DVTDEMALLV EGLDIGGEKT MEDLLVTLED 240
  241 HEGDDTLETV DEDGQMRLYG THENQSYLAR PVPEQNSSLG LRSRHGSLAN QSMILKDPLV 300
  301 NLFGSLHEKM PEAGGNTRSG IFPHFGSMFS TTADAPHGKP AHWEKDIESH YNKDNDDYAT 360
  361 DDGAGDDDDS DNDLRSPLMS RQTTSMDKDM IPHPTSGSTL SMRRHSTLMQ GNGESSMGIG 420
  421 GGWHMGYRYE NDEYKRYYLK EDGAESRRGS IISIPGGPDG GGSYIHASAL VSRSVLGPKS 480
  481 VHGSAMVPPE KIAASGPLWS ALLEPGVKRA LVVGVGIQIL QQFSGINGVL YYTPQILERA 540
  541 GVDILLSSLG LSSISASFLI SGLTTLLMLP AIVVAMRLMD VSGRRSLLLW TIPVLIVSLV 600
  601 VLVISELIHI SKVVNAALST GCVVLYFCFF VMGYGPIPNI LCSEIFPTRV RGLCIAICAM 660
  661 VFWIGDIIVT YSLPVLLSSI GLVGVFSIYA AVCVISWIFV YMKVPETKGM PLEVITDYFA 720
  721 FGAQAQASAP SKDI