YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL49_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKILPEMKS TQNLISSSPP PPLIPLKSNT SLSNLNSKIT PNILLIIIIL SIIFFISGLL  60
   61 HILVKFLLTP SRESREDYFD NVTALQGQLQ QLFNLHDSGV DQSLIDTLPV FHYKSIVGLK 120
  121 ISPFDCPVCL CEFETEDKLR LLPKCSHAFH VECIDTWLLS HSTCPLCRSN LLSGFSSHHN 180
  181 LSSSYLLVLE SEQSSRDMVP VLESNSQLGY DVNNDSESTR IRSGRKSCDP DGDMDGLDEK 240
  241 VVPLEVKLGK FRNIDHVGEG SDQKKNSISG NSKNVDGRRC LSMGSYEYIM DQEATLKVHV 300
  301 STKKLSGKDR VPSHRTVMSE CGFDPTVKGI EKSVVERESF SLSKIWLRGK KEKQKGTSAR 360
  361 DSDCSFVSSS SLRFPNHRIP PEESLKSENS ESLETKTPSF ARRTMHWLAG RQNKIVQPST 420
  421 SNV

Type	Start	End	Confidence
Cytoplasmic	1	42	0.94
Transmembrane Helix	43	64	0.95
Non-Cytoplasmic	65	423	0.96