YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12321955
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAPCWRRPS VKGDHSTRDA NGRCDGLLWY KDSGNHVAGE FSMSVIQANN LLEDHSKLES  60
   61 GPVSMFDSGP QATFVGVYDG HGGPEAARFV NKHLFDNIRK FTSENHGMSA NVITKAFLAT 120
  121 EEDFLSLVRR QWQIKPQIAS VGACCLVGII CSGLLYIANA GDSRVVLGRL EKAFKIVKAV 180
  181 QLSSEHNASL ESVREELRSL HPNDPQIVVL KHKVWRVKGI IQVSRSIGDA YLKKAEFNRE 240
  241 PLLAKFRVPE VFHKPILRAE PAITVHKIHP EDQFLIFASD GLWEHLSNQE AVDIVNTCPR 300
  301 NGIARKLIKT ALREAAKKRE MRYSDLKKID RGVRRHFHDD ITVIVVFLDS HLVSRSTSRR 360
  361 PLLSISGGGD LAGPST

Type	Start	End	Confidence
Cytoplasmic	1	137	0.76
Transmembrane Helix	138	158	0.85
Non-Cytoplasmic	159	376	0.88