YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EGY2_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	32	0.64
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	266	0.95
Transmembrane Helix	267	290	0.86
Cytoplasmic	291	309	0.84
Transmembrane Helix	310	328	0.85
Non-Cytoplasmic	329	338	0.61
Transmembrane Helix	339	357	0.86
Cytoplasmic	358	371	0.78
Transmembrane Helix	372	394	0.91
Non-Cytoplasmic	395	405	0.79
Transmembrane Helix	406	424	0.55
Cytoplasmic	425	432	0.53
Transmembrane Helix	433	457	0.75
Non-Cytoplasmic	458	478	0.54
Transmembrane Helix	479	505	0.82
Cytoplasmic	506	523	0.55
Transmembrane Helix	524	546	0.91
Non-Cytoplasmic	547	556	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLAVASFRG NFGVLSQCSS CCSLQFQPFV AATSSLNFGQ TGTSRRKKDL KLERVFRKRE  60
   61 TLVRVTETQT EPEGNDDEDN KEGKESSADD PPTKIPTELN SQSTVVNEAP GNEEENKAQF 120
  121 SSQDGDKLEV SSGSPLPGVN VSIIIHVIYK DDSIMFSGCL SFIKSCCEQP LQLDDSMRLP 180
  181 KETIDILRGQ VFGFDTFFVT SQEPYEGGVL FKGNLRGKPA TSYEKIKTRM ENNFGDQYKL 240
  241 FLLTNPEDDK PVAVVVPRRS LEPETTAVPE WFAAGSFGLV ALFTLFLRNV PALQSDLLSA 300
  301 FDNLELLKDG LPGALVTALV LGVHELGHIL VANSLGIKLG VPFFVPSWQI GSFGAITRIK 360
  361 NIVAKREDLL KVAAAGPLAG FSLGLILFLI GLFVPPSDGI GVVVDASVFH ESFLAGGIAK 420
  421 LLLGDALKEG TSISLNPLVI WAWAGLLING INSIPAGELD GGKIAFSIWG RKTATRLTGA 480
  481 SIALLGLSAL FSDVAFYWVV LIFFLQRGPI APLAEEITVP DDKYVSLGIL VLFLSLLVCL 540
  541 PYPFAFTGNE AMMIGL