YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.81
Transmembrane Helix	38	54	0.48
Non-Cytoplasmic	55	64	0.44
Transmembrane Helix	65	84	0.58
Cytoplasmic	85	93	0.73
Transmembrane Helix	94	115	0.86
Non-Cytoplasmic	116	137	0.85
Transmembrane Helix	138	160	0.88
Cytoplasmic	161	180	0.97
Transmembrane Helix	181	203	0.93
Non-Cytoplasmic	204	210	0.80
Transmembrane Helix	211	230	0.95
Cytoplasmic	231	324	0.97
Transmembrane Helix	325	344	0.88
Non-Cytoplasmic	345	369	0.84
Transmembrane Helix	370	388	0.94
Cytoplasmic	389	408	0.82
Transmembrane Helix	409	429	0.90
Non-Cytoplasmic	430	458	0.86
Transmembrane Helix	459	479	0.87
Cytoplasmic	480	494	0.81
Transmembrane Helix	495	517	0.91
Non-Cytoplasmic	518	539	0.88
Transmembrane Helix	540	559	0.94
Cytoplasmic	560	587	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVEKTEKNI AEDDESKIIY RGWKVMPFII GNETFEKLGI VGSSSNLVIY LTTVFNMKSI  60
   61 TAAKVVNIYG GTSNFGTIVA AFLCDSYFGR YKTLSFAMIA CFLGSVAMDL TAVIHPLHPA 120
  121 QCAKEIGSVC NGPSIGQIMF LAGAMVLLVI GAGGIRPCNL PFGADQFDPK TKEGKRGIES 180
  181 FFNWYFFTFT FAQMVSLTLI VYVQSNVSWS IGLAIPAILM LLGCIIFFAG SKLYVKVKAS 240
  241 GSPIHSITRV IVVAIKKRRL KPVGPNELYN YIASDFKNSK LGHTEQFRFL DKSAIQTQDD 300
  301 KLNKDGSPVD AWKLCSMQQV EEVKCVIRVL PVWLSAALFY LAYIQQTTYT IFQSLQSDRR 360
  361 LGPGSFQIPA GSYTVFLMLG MTIFIPIYDR VLVPFLRKYT GRDGGITQLQ RVGAGLFLCI 420
  421 TSMMVSAIVE QYRRKVALTK PTLGLAPRKG AISSMSGMWL IPQLVLMGIA DALAGVGQME 480
  481 FYYKQFPENM RSFAGSLYYC GIGLASYLST FLLSAVHDTT EGFSGGSWLP EDLNKGRLEY 540
  541 FYFLVAGMMT LNLAYFLLVS HWYRYKDVVA KDKDMDKTSA EFDKVSV