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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y1571_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFAEKNLYD FRFLLFISII LSCSISASAT IAEANALLKW KSTFTNSSKL SSWVHDANTN  60
   61 TSFSCTSWYG VSCNSRGSIE ELNLTNTGIE GTFQDFPFIS LSNLAYVDLS MNLLSGTIPP 120
  121 QFGNLSKLIY FDLSTNHLTG EISPSLGNLK NLTVLYLHQN YLTSVIPSEL GNMESMTDLA 180
  181 LSQNKLTGSI PSSLGNLKNL MVLYLYENYL TGVIPPELGN MESMTDLALS QNKLTGSIPS 240
  241 TLGNLKNLMV LYLYENYLTG VIPPEIGNME SMTNLALSQN KLTGSIPSSL GNLKNLTLLS 300
  301 LFQNYLTGGI PPKLGNIESM IDLELSNNKL TGSIPSSLGN LKNLTILYLY ENYLTGVIPP 360
  361 ELGNMESMID LQLNNNKLTG SIPSSFGNLK NLTYLYLYLN YLTGVIPQEL GNMESMINLD 420
  421 LSQNKLTGSV PDSFGNFTKL ESLYLRVNHL SGAIPPGVAN SSHLTTLILD TNNFTGFFPE 480
  481 TVCKGRKLQN ISLDYNHLEG PIPKSLRDCK SLIRARFLGN KFTGDIFEAF GIYPDLNFID 540
  541 FSHNKFHGEI SSNWEKSPKL GALIMSNNNI TGAIPTEIWN MTQLVELDLS TNNLFGELPE 600
  601 AIGNLTNLSR LRLNGNQLSG RVPAGLSFLT NLESLDLSSN NFSSEIPQTF DSFLKLHDMN 660
  661 LSRNKFDGSI PRLSKLTQLT QLDLSHNQLD GEIPSQLSSL QSLDKLDLSH NNLSGLIPTT 720
  721 FEGMIALTNV DISNNKLEGP LPDTPTFRKA TADALEENIG LCSNIPKQRL KPCRELKKPK 780
  781 KNGNLVVWIL VPILGVLVIL SICANTFTYC IRKRKLQNGR NTDPETGENM SIFSVDGKFK 840
  841 YQDIIESTNE FDPTHLIGTG GYSKVYRANL QDTIIAVKRL HDTIDEEISK PVVKQEFLNE 900
  901 VKALTEIRHR NVVKLFGFCS HRRHTFLIYE YMEKGSLNKL LANDEEAKRL TWTKRINVVK 960
  961 GVAHALSYMH HDRITPIVHR DISSGNILLD NDYTAKISDF GTAKLLKTDS SNWSAVAGTY1020
 1021 GYVAPEFAYT MKVTEKCDVY SFGVLILELI IGKHPGDLVS SLSSSPGEAL SLRSISDERV1080
 1081 LEPRGQNREK LLKMVEMALL CLQANPESRP TMLSISTTFS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle