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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|224589481, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAWLIWPI VLSLTALSAN SITESESLLK FKKSLNNTKS LDSWTPESEP CGASQRWIGL  60
   61 LCNKNSVFGL QIEQMGLSGK VDVAPLKDLP SLRTISIMNN SFSGDIPEFN RLTALKSLYI 120
  121 SGNRFSGNIP SDYFETMVSL KKAWLSNNHF SGLIPISLAT TLPNLIELRL ENNQFIGSIP 180
  181 NFTQTTLAIV DLSNNQLTGE IPPGLLKFDA KTFAGNSGLC GAKLSTPCPQ PKNSTASITI 240
  241 EGTMKDANKS KYFLAFSTLG VLLIVVLVSL AFRKKKKKRR RKKARRTSEQ DNSDDQQIQV 300
  301 TVEGSNSSRQ SRSSRSGELN KGVAGTSDLV MVNKEKGVFR LSDLMKAAAH VLGNPGGGSN 360
  361 RPRSSGGVGS AYKAVLSNGV TVVVKRVTVM NQVSVDVFDK EIRKLGSLQH KNVLTPLAYH 420
  421 FRQDEKLLVF EFVPNLNLLH RLHGDHEEFQ LDWPSRLKII QGIARGMWYL HRELGFLNLP 480
  481 HGNLKSSNIF LAEDGEPLIS EFGLQKLINP DAQSQSLVAF KSPEADRDGT VSAKSDVFSF 540
  541 GVVVLEILTG KFPSQYAGLN RAGGANLVEW LGSALEQGGW MDLLHPMVVT AAAEDKIMEE 600
  601 EIENVLRIGV RCTREDPDQR PNMTEVVDEL TIEDSNDDFI TIET

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle