YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.75
Transmembrane Helix	64	85	0.71
Non-Cytoplasmic	86	92	0.45
Transmembrane Helix	93	114	0.92
Cytoplasmic	115	185	0.52
Transmembrane Helix	186	207	0.94
Non-Cytoplasmic	208	214	0.66
Transmembrane Helix	215	239	0.86
Cytoplasmic	240	333	0.84
Transmembrane Helix	334	353	0.57
Non-Cytoplasmic	354	373	0.63
Transmembrane Helix	374	394	0.93
Cytoplasmic	395	413	0.66
Transmembrane Helix	414	435	0.89
Non-Cytoplasmic	436	466	0.63
Transmembrane Helix	467	485	0.52
Cytoplasmic	486	495	0.54
Transmembrane Helix	496	516	0.92
Non-Cytoplasmic	517	542	0.62
Transmembrane Helix	543	567	0.81
Cytoplasmic	568	607	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENPPNETEA KQIQTNEGKK TKGGIITMPF IIANEAFEKV ASYGLLPNMI MYLIRDYRFG  60
   61 VAKGTNVLFM WSAASNFTPL LGAFLSDSYL GRFLTISIAS LSSFLGMVLL WLTAMLPQVK 120
  121 PSPCDPTAAG SHCGSSTASQ LALLYSAFAL ISIGSGGIRP CSLAFGADQL DNKENPKNER 180
  181 VLESFFGWYY ASSAVAVLIA FTGIVYIQEH LGWKIGFGVP AVLMLIAALL FILASPLYVT 240
  241 RGVTKSLFTG LAQAIVAAYK KRKLSLPDHH DSFDCYYHMK DSEIKAPSQK LRFLNKACLI 300
  301 SNREEEIGSD GFALNPWRLC TTDKVEELKA LIKVIPIWST GIMMSINTSQ SSFQLLQATS 360
  361 MDRRLSRHGS SFQVPAGSFG MFTIIALALW VILYDRAVIP LASKIRGRPF RLSVKLRMGL 420
  421 GLFMSFLAMA ISAMVESFRR KKAISQGYAN NSNAVVDISA MWLVPQYVLH GLAEALTAIG 480
  481 QTEFFYTEFP KSMSSIAASL FGLGMAVASL LASVVLNAVN ELTSRNGKES WVSDNINKGH 540
  541 YNYYYWVLAI MSFINVIYYV ICSWSYGPLV DQVRNGRVNG VREEEELIDI VGKGFEKEDL 600
  601 SPVVKTN