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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SRF6_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.81
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRENWAVVAL FTLCIVGFEL RFIHGATDAS DTSALNTLFS GMHSPAQLTQ WTAAAGDPCG  60
   61 QNWRGVTCSG SRVTQIKLSG LELSGTLGGY MLDKLTSLTE LDLSSNNLGG DLPYQFPPNL 120
  121 QRLNLANNQF TGAASYSLSQ ITPLKYLNLG HNQFKGQIAI DFSKLDSLTT LDFSFNSFTN 180
  181 SLPATFSSLT SLKSLYLQNN QFSGTVDVLA GLPLETLNIA NNDFTGWIPS SLKGITLIKD 240
  241 GNSFNTGPAP PPPPGTPPIR GSPSRKSGGR ESRSSDESTR NGDSKKSGIG AGAIAGIIIS 300
  301 LLVVTALLVA FFLFRRKKSK RSSPMDIEKT DNQPFTLASN DFHENNSIQS SSSVETKKLD 360
  361 TSLSINLRPP PIDRNKSFDD EDSTRKPIAV KKSTVVVPSN VRLYSVADLQ IATGSFSVDN 420
  421 LLGEGTFGRV YRAEFDDGKV LAVKKIDSSA LPHGMTDDFI EMVSKIANLD HPNVTKLVGY 480
  481 CAEHGQHLVV YEFHKNGSLH DFLHLSEEES KALVWNSRVK IALGTARALE YLHEVCSPSI 540
  541 VDKNIKSANI LLDSELNPHL SDSGLASFLP TANELLNQTD EGYSAPEVSM SGQYSLKSDI 600
  601 YSFGVVMLEL LTGRKPFDST RSRSEQSLVR WATPQLHDID ALAKMVDPAL KGLYPVKSLS 660
  661 RFADVIALCV QPEPEFRPPM SEVVQALVVL VQRANMSKRT VGVDPSQRAG SADTTSDYM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle