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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB7B_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKAKKKKN GGGGNQRIAF YKLFTFADRY DIVLMVIGTL SAMANGLTQP FMSILMGQLI  60
   61 NVFGFSDHDH VFKEVSKVAV KFLYLAAYAG VVSFLQVSCW MVTGERQSTR IRRLYLKTIL 120
  121 RQDIGFFDTE TNTGEVIGRM SGDTILIQDS MGEKVGKFTQ LVSSFVGGFT VAFIVGMKLT 180
  181 LALLPCVPLI VGTGGAMTYI MSKKAQRVQL AYTEAGNVVQ QAVGSIRTVV AFTGEKQSMG 240
  241 KYEKKLEIAY KSMVKQGLYS GLGIGIMMVV VYCTYGFAIW YGARQIIEKG YTGGQVMNVI 300
  301 TSILTGGMAL GQTLPSLNSF AAGTAAAYKM FETIKRKPKI DAYDMSGEVL EEIKGDIELR 360
  361 DVYFRYPARP DVQIFVGFSL TVPNGMTVAL VGQSGSGKST VISLIERFYD PESGEVLIDG 420
  421 IDLKKFQVKW IRSKIGLVSQ EPILFATTIR ENIVYGKKDA SDQEIRTALK LANASNFIDK 480
  481 LPQGLETMVG EHGTQLSGGQ KQRIAIARAI LKNPKILLLD EATSALDAES ERIVQDALVK 540
  541 LMLSRTTVVV AHRLTTIRTA DMIAVVQQGK VIEKGTHDEM IKDPEGTYSQ LVRLQEGSKK 600
  601 EEAIDKEPEK CEMSLEIESS DSQNGIHSGT LTSPSGLPGV ISLDQTEEFH ENISSTKTQT 660
  661 VKKGKEVSLR RLAHLNKPEI SVLLLGSLAA VIHGIVFPVQ GLLLSRTIRI FFEPSNKLKN 720
  721 DSLFWALIFV ALGLTDLIVI PLQNYLFAIA GAKLIKRIRS LSFDRVLHQD ISWFDDTKNS 780
  781 SGVIGARLST DASTVKSIVG DVLGLIMQNM ATIIGAFIIA FTANWLLALM ALLVAPVMFF 840
  841 QGYYQIKFIT GFGAKARGKY EEASQVASDA VSSIRTVASF CAEDKVMDLY QEKCDEPKQQ 900
  901 GFKLGLVSGL CYGGSYLALY VIESVCFLGG SWLIQNRRAT FGEFFQVFFA LTLTAVGVTQ 960
  961 TSTMAPDINK AKDSAASIFD ILDSKPKIDS SSEKGTILPI VHGDIELQHV SFRYPMRPDI1020
 1021 QIFSDLCLTI SSGQTVALVG ESGSGKSTVI SLLERFYDPD SGKILLDQVE IQSLKLSWLR1080
 1081 EQMGLVSQEP VLFNETIGSN IAYGKIGGAT EEEIITAAKA ANVHNFISSL PQGYETSVGE1140
 1141 RGVQLSGGQK QRIAIARAIL KDPKILLLDE ATSALDAESE RVVQDALDQV MVNRTTVVVA1200
 1201 HLLTTIKDAD MIAVVKNGVI AESGRHETLM EISGGAYASL VAFNMSAN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle