YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAE2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD  60
   61 SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA GFVGTHVSAA LKRRGDGVLG 120
  121 LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR 180
  181 YAMENPGSYV HSNIAGFVNL LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA 240
  241 SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF 300
  301 EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD 360
  361 LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF GYKPSTDLQT GLKKFVRWYL 420
  421 GYYKQGGKKV AAAA

Type	Start	End	Confidence
Cytoplasmic	1	32	0.86
Transmembrane Helix	33	52	0.92
Non-Cytoplasmic	53	434	0.95