YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AAP4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	46	0.83
Non-Cytoplasmic	47	50	0.64
Transmembrane Helix	51	70	0.73
Cytoplasmic	71	106	0.69
Transmembrane Helix	107	132	0.76
Non-Cytoplasmic	133	173	0.54
Transmembrane Helix	174	198	0.85
Cytoplasmic	199	266	0.65
Transmembrane Helix	267	287	0.95
Non-Cytoplasmic	288	304	0.93
Transmembrane Helix	305	327	0.86
Cytoplasmic	328	369	0.92
Transmembrane Helix	370	389	0.91
Non-Cytoplasmic	390	393	0.78
Transmembrane Helix	394	415	0.87
Cytoplasmic	416	426	0.92
Transmembrane Helix	427	452	0.85
Non-Cytoplasmic	453	466	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVPRPAFKC FDDDGRLKRS GTVWTASAHI ITAVIGSGVL SLAWAIGQLG WIAGPTVMLL  60
   61 FSFVTYYSST LLSDCYRTGD PVSGKRNYTY MDAVRSILGG FRFKICGLIQ YLNLFGITVG 120
  121 YTIAASISMM AIKRSNCFHE SGGKNPCHMS SNPYMIMFGV TEILLSQIKD FDQIWWLSIV 180
  181 AAIMSFTYSA IGLALGIIQV AANGVVKGSL TGISIGAVTQ TQKIWRTFQA LGDIAFAYSY 240
  241 SVVLIEIQDT VRSPPAESKT MKIATRISIA VTTTFYMLCG CMGYAAFGDK APGNLLTGFG 300
  301 FYNPFWLLDV ANAAIVIHLV GAYQVFAQPI FAFIEKQAAA RFPDSDLVTK EYEIRIPGFR 360
  361 SPYKVNVFRA VYRSGFVVLT TVISMLMPFF NDVVGILGAL GFWPLTVYFP VEMYIRQRKV 420
  421 ERWSMKWVCL QMLSCGCLMI TLVAGVGSIA GVMLDLKVYK PFKTTY