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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB17B_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.35
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKEDEKESG RDKMKSFGSI RSIFMHADGV DWILMALGLI GAVGDGFITP VVVFIFNTLL  60
   61 NNLGTSSSNN KTFMQTISKN VVALLYVACG SWVICFLEGY CWTRTGERQA ARMREKYLRA 120
  121 VLRQDVGYFD LHVTSTSDVI TSISSDSLVI QDFLSEKLPN FLMNASAFVA SYIVSFILMW 180
  181 RLTIVGFPFI ILLLVPGLMY GRALVSISRK IHEQYNEAGS IAEQAISSVR TVYAFGSENK 240
  241 MIGKFSTALR GSVKLGLRQG LAKGITIGSN GVTHAIWAFL TWYGSRLVMN HGSKGGTVFV 300
  301 VISCITYGGV SLGQSLSNLK YFSEAFVAWE RILEVIKRVP DIDSNKKEGQ ILERMKGEVE 360
  361 FNHVKFTYLS RPETTIFDDL CLKIPAGKTV ALVGGSGSGK STVISLLQRF YDPIAGEILI 420
  421 DGVSIDKLQV NWLRSQMGLV SQEPVLFATS ITENILFGKE DASLDEVVEA AKASNAHTFI 480
  481 SQFPLGYKTQ VGERGVQMSG GQKQRIAIAR AIIKSPKILL LDEATSALDS ESERVVQESL 540
  541 DNASIGRTTI VIAHRLSTIR NADVICVIHN GQIVETGSHE ELLKRIDGQY TSLVSLQQME 600
  601 NEESNVNINV SVTKDQVMSL SKDFKYSQHN SIGSTSSSIV TNVSDLIPND NQPLVPSFTR 660
  661 LMVMNRPEWK HALYGCLSAA LVGVLQPVSA YSAGSVISVF FLTSHDQIKE KTRIYVLLFV 720
  721 GLAIFSFLVN ISQHYGFAYM GEYLTKRIRE QMLSKILTFE VNWFDIDDNS SGAICSRLAK 780
  781 DANVVRSMVG DRMSLLVQTI SAVIIACIIG LVIAWRLAIV MISVQPLIVV CFYTQRVLLK 840
  841 SLSEKASKAQ DESSKLAAEA VSNIRTITAF SSQERIIKLL KKVQEGPRRE SVHRSWLAGI 900
  901 VLGTSRSLIT CTSALNFWYG GRLIADGKIV SKAFFEIFLI FVTTGRVIAD AGTMTTDLAR 960
  961 GLDAVGSVFA VLDRCTTIEP KNPDGYVAEK IKGQITFLNV DFAYPTRPDV VIFENFSIEI1020
 1021 DEGKSTAIVG TSGSGKSTII GLIERFYDPL KGTVKIDGRD IRSYHLRSLR KYISLVSQEP1080
 1081 MLFAGTIREN IMYGGTSDKI DESEIIEAAK AANAHDFITS LSNGYDTNCG DKGVQLSGGQ1140
 1141 KQRIAIARAV LKNPSVLLLD EATSALDSKS ERVVQDALER VMVGRTSIMI AHRLSTIQNC1200
 1201 DMIVVLGKGK IVESGTHSSL LEKGPTGTYF SLAGIQRTLC 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle