YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8920621, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.86
Transmembrane Helix	33	55	0.86
Non-Cytoplasmic	56	78	0.72
Transmembrane Helix	79	98	0.86
Cytoplasmic	99	104	0.73
Transmembrane Helix	105	127	0.91
Non-Cytoplasmic	128	146	0.79
Transmembrane Helix	147	168	0.80
Cytoplasmic	169	188	0.84
Transmembrane Helix	189	210	0.84
Non-Cytoplasmic	211	218	0.81
Transmembrane Helix	219	239	0.94
Cytoplasmic	240	344	0.98
Transmembrane Helix	345	367	0.86
Non-Cytoplasmic	368	384	0.85
Transmembrane Helix	385	406	0.87
Cytoplasmic	407	423	0.95
Transmembrane Helix	424	444	0.92
Non-Cytoplasmic	445	473	0.89
Transmembrane Helix	474	492	0.61
Cytoplasmic	493	502	0.62
Transmembrane Helix	503	529	0.81
Non-Cytoplasmic	530	550	0.64
Transmembrane Helix	551	570	0.89
Cytoplasmic	571	606	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTMKKKEGE EETRDGTVDY YGRPSIRSNS GQWVAGIVIL LNQGLATLAF FGVGVNLVLF  60
   61 LTRVLQQNNA DAANNVSKWT GTVYIFSLVG AFLSDSYWGR YKTCAIFQVI FVIGLSSLSL 120
  121 SSYMFLIRPR GCGDEVTPCG SHSMMEITMF YFSIYLIALG YGGYQPNIAT LGADQFDEEH 180
  181 PKEGYSKIAF FSYFYLALNL GSLFSNTILG YFEDEGMWAL GFWASTGSAI IGLILFLVGT 240
  241 PRYRYFKPTG NPLSRFCQVL VAATKKSSVE APLRGREEMY DGDSEGKNAS VNTGRRIVHT 300
  301 DEFKFLDKAA YITARDLDDK KQDSVNPWRL CPVTQVEEVK CILRLMPIWL CTIIYSVVFT 360
  361 QMASLFVEQG AAMNTSVSDF KIPPASMSSF DILSVALFIF LYRRVLEPVA NRFKKNGSKG 420
  421 ITELHRMGIG LVIAVIAMIA AGIVECYRLK YADKSCTHCD GSSSLSIFWQ APQYSLIGAS 480
  481 EVFMYVGQLE FFNAQTPDGL KSFGSALCMM SMSMGNFVSS LLVTMVVKIS TEDHMPGWIP 540
  541 RNLNKGHLDR FYFLLAALTS IDLVVYIACA KWYKPIQLEG KDEMQDMSDD DYDTESEEER 600
  601 EKDSKV