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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: APC1_ARATH
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPGVRQLTV LGKFKPFGLI AEATDGKSPD DSYQYFLFDP ELTGERDDAD GNDANFSRQR  60
   61 EHELFIRDNC NVRKGYALVE ANFIGYWYNA CWSNLGRGTE AFLCVLQIAC LTIYNTSGEV 120
  121 VSVPLMRTVK SIWPLPCGLL LEQAGEVNPP SHVPFSPVSP ILGSREMLRQ RKEVGNSSPQ 180
  181 NFHSPVAHDL ISKRDMPCMS SHLILRDPLE EPGPTYVEER GKLTIMKDYD ERTIWTSDRL 240
  241 PLMTSYNKGK MQHSVWAAEF IESNLEASAS CSSGIVPDAV LSKRVSFRRI WQAKGAKKAA 300
  301 SKVFLATDNS VPVICFLILE QKKLLSVGLQ TVEINNEILF DVKPDISWSV SAIAAAPVVV 360
  361 TRSQVKIGLL PHLDIIVLSP ENDLFLYSGK QCLCRYVLPS WLGESIGSGD GESAKTDSGF 420
  421 RNLKITGLSD AVLGSINLSV NHSQIFRCAL TGKPSSSLAN DCIAAIAEGL RSDLYSLFLS 480
  481 LLWGDGHSDL QGSSIHFEWE ALCNIFLEIC QKPTVVHRKQ PKTASESSWE FLLISKFHKT 540
  541 YSRFHNGITS INRLDLEGIV PFDSKICSEE TLGSSCELMV QSLDCLHAVY ESLKMDNLRK 600
  601 QDLHHLAVLL CNIAKFLDEK CYLDYYIRDF PRLSTTIGAC TTLSSSRKPP NLFRWLENCL 660
  661 RRGCLSTNFD DLPDLIRRDG CSIVSWARKV VSFYSVLFGD KPEGRTLSSG VPCNIAPGSY 720
  721 SCNEELTILA MAGERFGLHQ LDLLPSGVSL PLRHALDSCR ESPPADWPAI AYVLLGREDM 780
  781 ALSVFRNFSS SKEFEMQSNT SLISMSIPYM LHLHPVIVPS SESIGLENTK IEDTNSVDGS 840
  841 VIDGMEHIFN SYTQLRYGRD LRLNEVRRLL CSARPVVVQT AANPTISDQE QQQAFTVPKL 900
  901 VLAGRLPSQQ NAIVNLDPNI RNIQELKTWP EFHNAVAAGL RLAPLQGKVS RTWIRYNKPG 960
  961 EPNAVHAGLL FGLGLQGYLH VLNLSDIYQY FTQDHESTTV GLMLGLAASY RGTMQPDIAK1020
 1021 ALFFHVPARY QASYTEFEIP TLLQSAALVS VGMLFEGSAH QQTMQLLLGE IGRRSAGDNV1080
 1081 LEREGYAVSA GFSLGLVALG RGGDALGSMD SLVNRLLLYL GAKEERSILV PSLEDHRSAA1140
 1141 QITDGSTSNV DITAPGAIIA LTLMYLKTES EVIFSKLSIP QTHYDLECVR PDFIMLRVIA1200
 1201 RNLIMWSRIC PTCDWIQSQV PEVVKNGISQ LRDDMDNMYE VDVEALVQAY VNIVAGACIS1260
 1261 LGLRFAGTRD GNARDLLNSY ALYLLNEIKP LSATPGNAFP RGISKFVDRG TLEMCLYLII1320
 1321 ISLSVVMAGS GDLQVFRLLR FLRSRNSADG HANYGTQMAV SLATGFLFLG GGMRTFSTNN1380
 1381 GSLAMLLITL YPRLPSGPND NRCHLQAFRH LYVLATEARW LQTIDVDSGL PVYAPLEVTV1440
 1441 KETKLYSETK FCEITPCILP ERAILKRICV CGPRYWPQQI ELVFGLRTLG ESNLIANSHR1500
 1501 ELDSDSVDHL VSTFSSDPSL IAFAQLCCDK SWNNSFDFLI LDLILWSQVA LAYNEAVSTG1560
 1561 RLASSGGFVQ SIFLASLRKR CEEVLNCSTE LKINLRNYLT SEAWPYDKNS KLQKDIIILS1620
 1621 WYLKWFNVPS PSIIKAAVEK IKSKSKNSTS AIPLLRLLLP NTHISVIGEI DRVFFPSN

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