YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.96
Transmembrane Helix	32	51	0.87
Non-Cytoplasmic	52	64	0.76
Transmembrane Helix	65	88	0.85
Cytoplasmic	89	106	0.85
Transmembrane Helix	107	130	0.90
Non-Cytoplasmic	131	146	0.83
Transmembrane Helix	147	165	0.95
Cytoplasmic	166	176	0.79
Transmembrane Helix	177	198	0.91
Non-Cytoplasmic	199	208	0.72
Transmembrane Helix	209	229	0.93
Cytoplasmic	230	249	0.89
Transmembrane Helix	250	271	0.71
Non-Cytoplasmic	272	287	0.63
Transmembrane Helix	288	305	0.48
Cytoplasmic	306	331	0.73
Transmembrane Helix	332	353	0.87
Non-Cytoplasmic	354	373	0.80
Transmembrane Helix	374	395	0.85
Cytoplasmic	396	408	0.72
Transmembrane Helix	409	429	0.92
Non-Cytoplasmic	430	435	0.80
Transmembrane Helix	436	458	0.92
Cytoplasmic	459	482	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSIETPLL LNTKQSQDED KEKIRWEKMK KVASMAAPMV AVNMSQYLLQ ATSTMIVGHR  60
   61 SELALAGIAL GSSFANVTGF GVLFGLSGSL ETLCGQAYGA KQYHKLGSYT FTSIVFLLII 120
  121 SVPISILWMF MNQILLLLHQ DPQIAELAGV YCLWLVPALF GYSVLESLVR YFQSQSLIYP 180
  181 MVLSSLAALS FHVPLCWLMV HKFDFGAKGA AASIGISYWL NAVFLWVYMK RSSRCVETRI 240
  241 YMSKDVFVHT NIFFQFAIPS AMMCCLEWLA FEVITLLSGL LPNSKLETSV ISICLTTSSL 300
  301 HYNLVNGIGD AASTNVANEL GAGNPRGARD SAAAAIIIAA VESVIVSSSL FLSRSVWPYA 360
  361 YSNVEEVISY VTDITPILCI SILMDSFLTV LSGIVRGTGW QKIGAYVNIT SYYVIGIPVG 420
  421 LLLCFHLHFN GKGLWAGLVT GSTLQTLILF LVIGFTNWSK EAIKARERIG DEKVWRHDSL 480
  481 LN