YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHT14_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.94
Transmembrane Helix	19	39	0.88
Non-Cytoplasmic	40	69	0.90
Transmembrane Helix	70	91	0.93
Cytoplasmic	92	99	0.92
Transmembrane Helix	100	120	0.94
Non-Cytoplasmic	121	125	0.84
Transmembrane Helix	126	148	0.83
Cytoplasmic	149	163	0.82
Transmembrane Helix	164	186	0.91
Non-Cytoplasmic	187	212	0.90
Transmembrane Helix	213	232	0.95
Cytoplasmic	233	294	0.97
Transmembrane Helix	295	313	0.73
Non-Cytoplasmic	314	343	0.67
Transmembrane Helix	344	364	0.82
Cytoplasmic	365	372	0.49
Transmembrane Helix	373	394	0.88
Non-Cytoplasmic	395	405	0.54
Transmembrane Helix	406	428	0.85
Cytoplasmic	429	440	0.57
Transmembrane Helix	441	464	0.80
Non-Cytoplasmic	465	481	0.69
Transmembrane Helix	482	503	0.90
Cytoplasmic	504	534	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAREQLQVLN ALDVAKTQWY HFTAIIIAGM GFFTDAYDLF CISLVTKLLG RIYYHVEGAQ  60
   61 KPGTLPPNVA AAVNGVAFCG TLAGQLFFGW LGDKLGRKKV YGMTLMVMVL CSIASGLSFG 120
  121 HEPKAVMATL CFFRFWLGFG IGGDYPLSAT IMSEYANKKT RGAFVSAVFA MQGFGIMAGG 180
  181 IFAIIISSAF EAKFPSPAYA DDALGSTIPQ ADLVWRIILM AGAIPAAMTY YSRSKMPETA 240
  241 RYTALVAKDA KQAASDMSKV LQVEIEPEQQ KLEEISKEKS KAFGLFSKEF MSRHGLHLLG 300
  301 TTSTWFLLDI AFYSQNLFQK DIFSAIGWIP PAQSMNAIQE VFKIARAQTL IALCSTVPGY 360
  361 WFTVAFIDVI GRFAIQMMGF FFMTVFMFAL AIPYNHWTHK ENRIGFVIMY SLTFFFANFG 420
  421 PNATTFVVPA EIFPARFRST CHGISAASGK LGAMVGAFGF LYLAQNPDKD KTDAGYPPGI 480
  481 GVRNSLIVLG VVNFLGILFT FLVPESKGKS LEEMSGENED NENSNNDSRT VPIV