YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALSB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	307	0.69
Transmembrane Helix	308	327	0.84
Cytoplasmic	328	337	0.54
Transmembrane Helix	338	355	0.67
Non-Cytoplasmic	356	376	0.83
Transmembrane Helix	377	399	0.89
Cytoplasmic	400	416	0.94
Transmembrane Helix	417	439	0.91
Non-Cytoplasmic	440	448	0.67
Transmembrane Helix	449	468	0.79
Cytoplasmic	469	480	0.86
Transmembrane Helix	481	501	0.91
Non-Cytoplasmic	502	525	0.88
Transmembrane Helix	526	545	0.89
Cytoplasmic	546	550	0.77
Transmembrane Helix	551	572	0.87
Non-Cytoplasmic	573	1342	0.98
Transmembrane Helix	1343	1365	0.90
Cytoplasmic	1366	1385	0.87
Transmembrane Helix	1386	1407	0.84
Non-Cytoplasmic	1408	1421	0.73
Transmembrane Helix	1422	1440	0.81
Cytoplasmic	1441	1479	0.86
Transmembrane Helix	1480	1499	0.79
Non-Cytoplasmic	1500	1505	0.64
Transmembrane Helix	1506	1529	0.88
Cytoplasmic	1530	1587	0.74
Transmembrane Helix	1588	1606	0.56
Non-Cytoplasmic	1607	1612	0.71
Transmembrane Helix	1613	1636	0.89
Cytoplasmic	1637	1649	0.70
Transmembrane Helix	1650	1670	0.92
Non-Cytoplasmic	1671	1676	0.64
Transmembrane Helix	1677	1698	0.86
Cytoplasmic	1699	1716	0.62
Transmembrane Helix	1717	1739	0.89
Non-Cytoplasmic	1740	1768	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRQRPSVAT ARDAPSLEVY NIIPIHDFLT EHPSLRYPEV RAAAAALRIV GDLPKPPFAD  60
   61 FTPRMDLMDW LGLLFGFQID NVRNQRENLV LHLANSQMRL QPPPRHPDGL DPTVLRRFRK 120
  121 KLLRNYTNWC SFLGVRCHVT SPIQSRHQTN AVLNLRRELL YVALYLLIWG ESANLRFMPE 180
  181 CLCYIFHHMA MELNKVLAGE FDDMTGMPYW PSFSGDCAFL KSVVMPIYKT VKTEVESSNN 240
  241 GTKPHSAWRN YDDINEYFWS KRALKSLKWP LDYTSNFFDT TPKSSRVGKT GFVEQRSFWN 300
  301 VYRSFDRLWI LLLLYLQAAI IVATSDVKFP WQDRDVEVAL LTVFISWAGL RLLQSVLDAS 360
  361 TQYSLVSRET YWLFIRLTLK FVVAVAWTVL FSVFYARIWS QKNKDGVWSR AANERVVTFL 420
  421 KVVFVYVIPE LLALVLFIVP CIRNWVEELN LGVVYFLTWW FYSKTFVGRG MREGLVDNVK 480
  481 YTLFWIIVLA TKFIFSYFLQ IRPLIAPTRA LLNLKDATYN WHEFFGSTHR IAVGMLWLPV 540
  541 ILVYLMDLQI WYSIYSSLVG ATIGLFSHLG EIRNIDQLRL RFQFFSSAMQ FNLKPEEHLL 600
  601 SPKATMLKKA RDAIHRLKLR YGIGQPFNKI ESSQVEATWF ALIWNEIILT FREEDLISDR 660
  661 EVELLELPPN CWNIRVIRWP CFLLCNELLL ALSQANELCD APDHWLWSKI CSSEYRRCAV 720
  721 MEAFDSIKFV ILKIVKNGTE EESILNRLFM EIDENVENEK ITEVYKLTVL LRIHEKLISL 780
  781 LERLMDPEKK VFRIVNILQA LYELCAWEFP KTRRSTPQLR QLGLAPISLE ADTELLFVNA 840
  841 INLPPLDDVV FYRQIRRVHT ILTSRDPMHN VPKNIEARER LAFFSNSLFM TMPQAPSVEK 900
  901 MMAFSVLTPY YDEEVMYRQE MLRAENEDGI STLFYLQRIY EDEWVNFLER MRREGAENEN 960
  961 DIWSKKVRDL RLWASYRGQT LSRTVRGMMY YYSALKKLAF LDSASEMDIR MGTQIAPEAR1020
 1021 RSYYTNDGGD NTLQPTPSQE ISRMASGITH LLKGSEYGSA MMKFTYVVAC QVYGQHKARG1080
 1081 DHRAEEILFL MKNHDALRIA YVDEVDLGRG EVEYYSVLVK FDQQLQREVE IYRIRLPGPL1140
 1141 KLGEGKPENQ NHALIFTRGD AIQTIDMNQD NHFEEALKMR NLLESFKTYY GIRKPTILGV1200
 1201 REKVFTGSVS SLAWFMSAQE TSFVTLGQRV LANPLKVRMH YGHPDVFDRF WFVPRGGISK1260
 1261 ASRVINISED IFAGFNCTLR GGNVTHHEYI QVGKGRDVGL NQISMFEAKV ASGNGEQALS1320
 1321 RDVYRLGHRL DFFRMLSFFY TTVGYYFNTM LIVFTVYAFL WGRLYLALSG VEKIAKDRSS1380
 1381 SNEALGAILN QQFIIQLGLF TALPMILENS LERGFLPAVW DFITMQLQLA SFFYTFSMGT1440
 1441 RTHYFGRTIL HGGAKYRATG RGFVVEHKKF AENYRLYART HFIKAIELAI ILLVYAAYSP1500
 1501 LAKSSFVYIL MTISSWFLIT SWIISPFLFN PSGFDWLKTV NDFDDFIAWL WSRGGLFTKA1560
 1561 DQSWFTWWNE EQEHLKTTGV WGKLLEIILD LRFFFFQYSI VYHLRIAENR TSIGVYLISW1620
 1621 GCIIGIVAIY ITTIYAQKRY SVKEHIKYRF IQFLVILLTV LVVVMMLQFT KLTVVDLLIS1680
 1681 LLAFVPTGWG LISIAQVLKP FLLSTVVWDT VISVARFYDL FFGLIVMAPV ALLSWLPGFQ1740
 1741 NMQTRILFNE AFSRGLQISI ILAGKKST